Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1856 ATGCAAGGGTTTTTTCCCCTTTTCTGCTCTCAGTGTTCCACCGTTGCTTACCGCAGCCGCCGATCCCCACCAGCAGCTCGACTATTACTAATTTTTAAGATATATTTTGCCACACACCAACCCTCACCGTTTCCGGCACATCCCCACCGCCACTTCTCTTTCATCTTCTTATCTCACTCTCTGTCGCCGCCCACAGCCGGACGTTGCCCTTTCTCGCCGCCGCAGCCCTCGACAATTGAACGGAACCGATCCGCCGTCTCGATTCTCGAACGGCCCCGATCTGTAGAAAACAGTCTCAAATTCTCACTCGCCGACTCTCCTCTAACAACAGAAGGTGCTGTAGCAAAAATGGTTAGCGAAGTGGCTGAGAATGGAGTAGGCGATATGGTAATTGATGGTAACGAACAGAAGCCCAAGAACGTTGTGCCTGATGGGTTCGATGCTAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATACTGATTTTTTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCGGGGAGTGACCAATCCTATTTTGGCCGAAGAGAGTTCTCATTCACGTTGGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTTTGTCTGAAATGGAAAATTCGATCAAGGAAAAGTGTCCGTTTAAGATTGATATCGGGCCTGTATACAGCGTGGATCCTGCGAAGAGACACGCATATGCTGGTGATAATGTATTTACTCCAGTGGAGAGAGAGCTTGTTTTTGATATAGATATGACCGATTATGATGATGTTAGATATTGTTGTTCAGGAGCTGATGTTTGTTTGGATTGCTGGCCTTTAATGACTGCTGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATACTCTGGGTATTTAGTGGTCGACGTGGTGTTCATTGTTGGGTCTGTGATGGCAAAGCGAGAAGGTTGTCTAATGAACAGAGAGCTGCCATTGCTGAATATTTTCATTTATATCAGGGTAATGAAAATAGTCGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTTGCGAGATCATACATAGAAGTTCTCGAGGATAGCTTTGAATCAAAATTGCTTTCTAGTCAAAAAATTTTCTCAACTGAGGAGAGATATGAGAAGATCTTAGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGGGGAAGGTGGCAAGAGAATAGGCGACCCTCTAAAAAAGATGTTAACTCTGCAAGATGGGAGCAACTAAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTCGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTGTTTGTGTCCCTATCAACCCTGAACGATGTGACGAGTTTGATCCAACTACCGTACCAACTGTTGCCCAGCTTCTAGAAGAACTTAATGCAGCGGATATGGTAGTTGATGGTGAGACTGACTGGGATAGAACCTCACTCGGGGAATCGATAAGGTTTTTCAGATCATCATTCTTACAGCCATTACTGAAATCATGCAAGGATGAGCTAGAATCTTCGTACAATGCTAAAGTGCAACAGTCGAGAAATTCTCTGAGTTGGTAG 1701 43.27 MQGFFPLFCSQCSTVAYRSRRSPPAARLLLIFKIYFATHQPSPFPAHPHRHFSFIFLSHSLSPPTAGRCPFSPPQPSTIERNRSAVSILERPRSVENSLKFSLADSPLTTEGAVAKMVSEVAENGVGDMVIDGNEQKPKNVVPDGFDANYLKIYYGKLFPYTDFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLEDSFESKLLSSQKIFSTEERYEKILDMIHDESITSELRGRWQENRRPSKKDVNSARWEQLKNMLQSGKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRVCVPINPERCDEFDPTTVPTVAQLLEELNAADMVVDGETDWDRTSLGESIRFFRSSFLQPLLKSCKDELESSYNAKVQQSRNSLSW 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58979839 58989398 + Tan0011562.3 Tan10g1856 766650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1856 566 SUPERFAMILY Prim-pol domain 148 511 - -
Tan10g1856 566 FunFam DNA primase 138 547 - -
Tan10g1856 566 PANTHER DNA PRIMASE SMALL SUBUNIT 144 552 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
Tan10g1856 566 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 152 504 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1856 566 CDD AE_Prim_S 160 495 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1856 566 Pfam DNA primase small subunit 253 486 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1856 566 Gene3D DNA primase, PRIM domain 139 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1855 Tan-Chr10:58979839 Tan10g1856 Tan-Chr10:58979839 1.30E-270 tandem
Tan10g1856 Tan-Chr10:58979839 Tan10g1857 Tan-Chr10:58980154 9.40E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1856 K02684 - csv:101203146 864.374