Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1857 ATGGTTAGCGAAGTGGCTGAGAATGGAGTAGGCGATATGGTAATTGATGGTAACGAACAGAAGCCCAAGAACGTTGTGCCTGATGGGTTCGATGCTAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATACTGATTTTTTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCGGGGAGTGACCAATCCTATTTTGGCCGAAGAGAGTTCTCATTCACGTTGGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTTTGTCTGAAATGGAAAATTCGATCAAGGAAAAGTGTCCGTTTAAGATTGATATCGGGCCTGTATACAGCGTGGATCCTGCGAAGAGACACGCATATGCTGGTGATAATGTATTTACTCCAGTGGAGAGAGAGCTTGTTTTTGATATAGATATGACCGATTATGATGATGTTAGATATTGTTGTTCAGGAGCTGATGTTTGTTTGGATTGCTGGCCTTTAATGACTGCTGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATACTCTGGGTATTTAGTGGTCGACGTGGTGTTCATTGTTGGGTCTGTGATGGCAAAGCGAGAAGGTTGTCTAATGAACAGAGAGCTGCCATTGCTGAATATTTTCATTTATATCAGGGTAATGAAAATAGTCGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTTGCGAGATCATACATAGAAGTTCTCGAGGATAGCTTTGAATCAAAATTGCTTTCTAGTCAAAAAATTTTCTCAACTGAGGAGAGATATGAGAAGATCTTAGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGGGGAAGGTGGCAAGAGAATAGGCGACCCTCTAAAAAAGATGTTAACTCTGCAAGATGGGAGCAACTAAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTCGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTGTTTGTGTCCCTATCAACCCTGAACGATGTGACGAGTTTGATCCAACTACCGTACCAACTGTTGCCCAGCTTCTAGAAGAACTTAATGCAGCGGATATGGTAGTTGATGGTGAGACTGACTGGGATAGAACCTCACTCGGGGAATCGATAAGGTTTTTCAGATCATCATTCTTACAGCCATTACTGAAATCATGCAAGGATGAGCTAGAATCTTCGTACAATGCTAAAGTGCAACAGTCGAGAAATTCTCTGAGTTGGTAG 1353 40.8 MVSEVAENGVGDMVIDGNEQKPKNVVPDGFDANYLKIYYGKLFPYTDFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLEDSFESKLLSSQKIFSTEERYEKILDMIHDESITSELRGRWQENRRPSKKDVNSARWEQLKNMLQSGKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRVCVPINPERCDEFDPTTVPTVAQLLEELNAADMVVDGETDWDRTSLGESIRFFRSSFLQPLLKSCKDELESSYNAKVQQSRNSLSW 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58980154 58989398 + Tan0011562.1 Tan10g1857 766651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1857 450 Gene3D DNA primase, PRIM domain 23 431 - -
Tan10g1857 450 FunFam DNA primase 22 431 - -
Tan10g1857 450 Pfam DNA primase small subunit 137 370 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1857 450 SUPERFAMILY Prim-pol domain 32 395 - -
Tan10g1857 450 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 36 388 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1857 450 CDD AE_Prim_S 44 379 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Tan10g1857 450 PANTHER DNA PRIMASE SMALL SUBUNIT 33 436 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1855 Tan-Chr10:58979839 Tan10g1857 Tan-Chr10:58980154 1.30E-270 dispersed
Tan10g1856 Tan-Chr10:58979839 Tan10g1857 Tan-Chr10:58980154 9.40E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1857 K02684 - csv:101203146 864.374