Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1902 ATGAGAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATCAGAAAGCGGACAGCTGATGAAGATGAGGAGGAGAACTCTAAAATCGAGACTTCGTTGTTGCTAAACCATAAAAAAGCCCCCAAGATTGAAAGCAAGCTTTATTTTTCTTCTGGACCCTCGAAAAGTTCCTTCACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTTCAATTTGAGTCTTCAAAAGAAATCCAAGTTCACCATGATAGCAGGGCCACTGCAACTCTAGAAACAGAAACTGAGTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGCCAATGCCTATGTGGATTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGCGAAAAAGCTGGTGGAGCACATGGGCCACTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTATAAAGAGACTGGTTATTGTGGTTATGGAGATGCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAAGAAGTAGAGAAAGCAAGGAAGAGAAAGTTAGCTATGGGATCCGATAATGGGGATGAGGATGTTGTAGAACAGAGTGATGAAGATGCCTTGCCCTTTGCTTGTTTTATTTCCCGTGAGCCATTTGTGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATAAGGAAAAAGATGGCACAGAGCAAATAA 960 41.98 MRDTGENQQPEQVCSFFKKPTKNKNIRKRTADEDEEENSKIETSLLLNHKKAPKIESKLYFSSGPSKSSFTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGANAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDNGDEDVVEQSDEDALPFACFISREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 60696842 60710988 - Tan0009977.5 Tan10g1902 766696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1902 319 Gene3D - 183 217 - -
Tan10g1902 319 SMART c3hfinal6 185 212 IPR000571 GO:0046872(InterPro)
Tan10g1902 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 317 IPR013083 -
Tan10g1902 319 FunFam Zinc finger CCCH domain-containing protein 1 183 217 - -
Tan10g1902 319 MobiDBLite consensus disorder prediction 26 40 - -
Tan10g1902 319 FunFam RING finger protein 113A 258 317 - -
Tan10g1902 319 ProSiteProfiles Zinc finger RING-type profile. 260 298 IPR001841 -
Tan10g1902 319 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872(InterPro)
Tan10g1902 319 ProSitePatterns Zinc finger RING-type signature. 275 284 IPR017907 -
Tan10g1902 319 SMART ring_2 260 297 IPR001841 -
Tan10g1902 319 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872(InterPro)
Tan10g1902 319 Pfam Zinc finger, C3HC4 type (RING finger) 260 301 - -
Tan10g1902 319 CDD RING-HC_RNF113A_B 253 306 - -
Tan10g1902 319 SUPERFAMILY RING/U-box 258 301 - -
Tan10g1902 319 PANTHER ZINC FINGER PROTEIN 183 12 318 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Tan10g1902 319 MobiDBLite consensus disorder prediction 1 40 - -
Tan10g1902 319 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1900 Tan-Chr10:60696842 Tan10g1902 Tan-Chr10:60696842 6.40E-184 dispersed
Tan10g1902 Tan-Chr10:60696842 Tan10g1904 Tan-Chr10:60696842 6.40E-184 dispersed
Tan10g1901 Tan-Chr10:60696842 Tan10g1902 Tan-Chr10:60696842 6.40E-184 tandem
Tan10g1902 Tan-Chr10:60696842 Tan10g1903 Tan-Chr10:60696842 6.40E-184 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28614 PF13920 zf-C3HC4_3 4.00E-07 CL0229 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1902 K13127 - csv:101221334 595.89