Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g1902 | ATGAGAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATCAGAAAGCGGACAGCTGATGAAGATGAGGAGGAGAACTCTAAAATCGAGACTTCGTTGTTGCTAAACCATAAAAAAGCCCCCAAGATTGAAAGCAAGCTTTATTTTTCTTCTGGACCCTCGAAAAGTTCCTTCACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTTCAATTTGAGTCTTCAAAAGAAATCCAAGTTCACCATGATAGCAGGGCCACTGCAACTCTAGAAACAGAAACTGAGTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGCCAATGCCTATGTGGATTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGCGAAAAAGCTGGTGGAGCACATGGGCCACTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTATAAAGAGACTGGTTATTGTGGTTATGGAGATGCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAAGAAGTAGAGAAAGCAAGGAAGAGAAAGTTAGCTATGGGATCCGATAATGGGGATGAGGATGTTGTAGAACAGAGTGATGAAGATGCCTTGCCCTTTGCTTGTTTTATTTCCCGTGAGCCATTTGTGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATAAGGAAAAAGATGGCACAGAGCAAATAA | 960 | 41.98 | MRDTGENQQPEQVCSFFKKPTKNKNIRKRTADEDEEENSKIETSLLLNHKKAPKIESKLYFSSGPSKSSFTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGANAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDNGDEDVVEQSDEDALPFACFISREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 60696842 | 60710988 | - | Tan0009977.5 | Tan10g1902 | 766696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g1902 | 319 | Gene3D | - | 183 | 217 | - | - | |
Tan10g1902 | 319 | SMART | c3hfinal6 | 185 | 212 | IPR000571 | GO:0046872(InterPro) | |
Tan10g1902 | 319 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 317 | IPR013083 | - | |
Tan10g1902 | 319 | FunFam | Zinc finger CCCH domain-containing protein 1 | 183 | 217 | - | - | |
Tan10g1902 | 319 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - | |
Tan10g1902 | 319 | FunFam | RING finger protein 113A | 258 | 317 | - | - | |
Tan10g1902 | 319 | ProSiteProfiles | Zinc finger RING-type profile. | 260 | 298 | IPR001841 | - | |
Tan10g1902 | 319 | ProSiteProfiles | Zinc finger C3H1-type profile. | 185 | 213 | IPR000571 | GO:0046872(InterPro) | |
Tan10g1902 | 319 | ProSitePatterns | Zinc finger RING-type signature. | 275 | 284 | IPR017907 | - | |
Tan10g1902 | 319 | SMART | ring_2 | 260 | 297 | IPR001841 | - | |
Tan10g1902 | 319 | SUPERFAMILY | CCCH zinc finger | 184 | 216 | IPR036855 | GO:0046872(InterPro) | |
Tan10g1902 | 319 | Pfam | Zinc finger, C3HC4 type (RING finger) | 260 | 301 | - | - | |
Tan10g1902 | 319 | CDD | RING-HC_RNF113A_B | 253 | 306 | - | - | |
Tan10g1902 | 319 | SUPERFAMILY | RING/U-box | 258 | 301 | - | - | |
Tan10g1902 | 319 | PANTHER | ZINC FINGER PROTEIN 183 | 12 | 318 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
Tan10g1902 | 319 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Tan10g1902 | 319 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 186 | 211 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan10g1900 | Tan-Chr10:60696842 | Tan10g1902 | Tan-Chr10:60696842 | 6.40E-184 | dispersed | |
Tan10g1902 | Tan-Chr10:60696842 | Tan10g1904 | Tan-Chr10:60696842 | 6.40E-184 | dispersed | |
Tan10g1901 | Tan-Chr10:60696842 | Tan10g1902 | Tan-Chr10:60696842 | 6.40E-184 | tandem | |
Tan10g1902 | Tan-Chr10:60696842 | Tan10g1903 | Tan-Chr10:60696842 | 6.40E-184 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28614 | PF13920 | zf-C3HC4_3 | 4.00E-07 | CL0229 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g1902 | K13127 | - | csv:101221334 | 595.89 |