Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1940 ATGGAACCCACTTATAGAGGCGTTCGTAAGCGCAAATGGGGCAAATGGGTCTCCGAAATCCGCGAACCCGGCAAAAAAACCCGAATCTGGCTCGGTAGTTACGACCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCCGCACTCTACCTCCGCGGCCGCGACGCCCGCCTCAACTTCCCCGAGCTCGCCGAGTCCTTCCCTCGCCCGCCGAGTTCGACCCCGGAGGACATTCAGACGGCGGCGCAGATGGCTGCATTGCGGATGAGGATGCCGCCCGGTGCGGCGGAGTCTGGCGGTCGGGGTGGGCCGGCGCCAGTTAGAGTGGGGCTGTCGGCCAGCCAGATTCAAGCGATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTGTTTAGAGGAAGAGTCGTCAGGTTTTTTGTGTGATGGTTTTGATGAGTGGGAGGATAACATGCAGATGCATCATCATTCCATTTGGGATTCTTAA 510 59.8 MEPTYRGVRKRKWGKWVSEIREPGKKTRIWLGSYDLPEMAAAAYDVAALYLRGRDARLNFPELAESFPRPPSSTPEDIQTAAQMAALRMRMPPGAAESGGRGGPAPVRVGLSASQIQAINESPLDSPTMWMQMAAEALCLEEESSGFLCDGFDEWEDNMQMHHHSIWDS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 62178984 62179680 - Tan0010995.1 Tan10g1940 766734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1940 169 CDD AP2 5 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1940 169 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1940 169 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677(InterPro)
Tan10g1940 169 Pfam AP2 domain 4 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1940 169 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1940 169 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1940 169 FunFam Ethylene-responsive transcription factor 2 4 62 - -
Tan10g1940 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 114 IPR051032 -
Tan10g1940 169 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1940 169 SMART rav1_2 4 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1563 Tan-Chr3:71896518 Tan10g1940 Tan-Chr10:62178984 9.70E-20 dispersed
Tan10g0052 Tan-Chr10:874216 Tan10g1940 Tan-Chr10:62178984 2.10E-27 dispersed
Tan10g1832 Tan-Chr10:57222820 Tan10g1940 Tan-Chr10:62178984 1.20E-24 dispersed
Tan10g1940 Tan-Chr10:62178984 Tan11g1299 Tan-Chr11:11128826 7.90E-16 dispersed
Tan10g1940 Tan-Chr10:62178984 Tan10g1945 Tan-Chr10:62525167 3.80E-50 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28619 PF00847 AP2 9.50E-15 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1940 - - - 0.0