Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g1945 ATGGGAGAGCCGAGCTCAATGGGAAGCCATGGAGCTGCGACATCGAGCTATCGAGGCGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAAATTCGCGAGCCGGGAAAGAAGACGAGAATATGGTTGGGGAGCTTCGAGACCCCGGAGATGGCGGCGGCGGCTTACGACGTCGCCGCCTACCACTTCCGTGGTCGCGACGCTCGTCTCAACTTCCCACATCTTGTCAACTCTCTTCCCTTCCCTCTTGGCTCTGCCCCTGATGACATCCGCCTCGCTGCCCATGAGGCAGCGTTGCGGCTACGAACAACGCCTACCGTTGTGCCTGAGGGAAGTGAGAATTCTGGTTCGGGGCTAGCCCCGGTCACCGTGCGGCTGTCCCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTGATGGAGGAGTATTCGAATGCCACTGTGTTCGCCGATGAAATGGACGATGAGCTGTGGAAGAATATGCATAATGATTCGCTGTGGGATCCTTAG 555 57.3 MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLGSAPDDIRLAAHEAALRLRTTPTVVPEGSENSGSGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSESLLMEEYSNATVFADEMDDELWKNMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 62525167 62526536 - Tan0014521.1 Tan10g1945 766739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g1945 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1945 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1945 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 145 IPR051032 -
Tan10g1945 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1945 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1945 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Tan10g1945 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1945 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Tan10g1945 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g1945 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1640 Tan-Chr5:42919343 Tan10g1945 Tan-Chr10:62525167 1.40E-20 dispersed
Tan10g1945 Tan-Chr10:62525167 Tan11g1121 Tan-Chr11:8870214 3.80E-19 dispersed
Tan10g1940 Tan-Chr10:62178984 Tan10g1945 Tan-Chr10:62525167 3.80E-50 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28620 PF00847 AP2 3.60E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g1945 - - - 0.0