Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2000 ATGGGCTGCATTTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAGTCAAAAAGAATCTGAAACTGAAAAAGATTTGAACAAATCTTCAGTTCAATTGGTTGCTCCTTCTCCCTCAAAAAGAGAGGATTTGTTGTTAGAGATTCAGCTGTCAAGGCAGGCATCTAAAGCAAATGGGGGTTCTGTTCATAAAACAAAGGCCAATGGTGGTTCTGTTCATAAAACAAAGGCCAATGGAGGGTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGTCCACAAAAGCGAATAATGATAATGCTTCAGCAGGTGGAAAACAGCCCGACATTTTTAGGTTAGCTAGCTTGTCTAAAGGAGCTGAAGCTGAACATGTCAAGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGACGCCTCGCCGGGCTGACTCCTTTGAGAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAGAGCCCGTGACCTTGAAACTGGAAAAATCGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCCTGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTTACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCAGGCCTTTTGGCAGCTCCTGGACACAAGTTTACCGAAGCTCAGATCAAATGTTATGTGCAACAATTGATGCATGGACTCGAACACTGCCATAGTCGGGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTCAAGATTGGGGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGTCGAGTAGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCGAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCGTTGCTGAACTATTTGCTGGAAAACCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTCTGTGGATCACCATCTGAGGAGTTCTGGCGGAGAACAAAATTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGTGTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGTCTCTTGTTAATAAACTACTTGCTATTGAACCAGAGCATAGAGGATCTGCTGCTTCAGCTCTCAAAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCAAGATATCCTCCAAGCAAGGAAATCGATGCCAAGCTTCGGAATGAAGAAGAAAAAAAGAGAAAAGCAGAAGCTGTGAAGGGACGTCATCCTGAATCAGTAAGAAGGGGCTCGAGAGACACCAAGGCAGTTCCGACTCCCGAATTCAATGCTCAAGGAGACATTACAATAAAGGTACACCCACTCACGAAAAAGATGAGTACTAAATACAACCCTCAAGAGGACGGTGAGCCTCCGAGAGTTGCGCAGAATCGGTACACCCACTCAACATCTATGGTGCACCCAACCATTGCAAGTTCATGGTGTAAGCCTACCGGGGCCTCAAGAAATTGTGCAGAGTTAAAGACACAGAAATCTCAGATGCATAAGTCAGTGGGAGATTTGTCAATCTCTTCTCTCAAGAAGGAAGACTTAGTGTCTGCTAAAGATTCTGGAACGGCTTATGTCCAAAAGAAGAACAGAATACATTACTCAGGACCGTTGGTGCCTCCAGGGGGAAACATTGAAGACATGCTGAAAGAGCACGAGAGACAAATCCAACAGGCTTTTCGAAAGGCACGATTCGACAAAGAAAAGACAAACAAGAGTTATGGTGATCAGCTTTGA 1965 44.17 MGCICSRDSSEPEDSSQKESETEKDLNKSSVQLVAPSPSKREDLLLEIQLSRQASKANGGSVHKTKANGGSVHKTKANGGSVHRAKEDDESENKSIKSTKANNDNASAGGKQPDIFRLASLSKGAEAEHVKAGWPSWLASVAGEAIKGWTPRRADSFEKLDKIGQGTYSSVYRARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLLAAPGHKFTEAQIKCYVQQLMHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPQHRYKSCVSETFKSFPSSALSLVNKLLAIEPEHRGSAASALKSEFFRTEPLPCDPSSLPRYPPSKEIDAKLRNEEEKKRKAEAVKGRHPESVRRGSRDTKAVPTPEFNAQGDITIKVHPLTKKMSTKYNPQEDGEPPRVAQNRYTHSTSMVHPTIASSWCKPTGASRNCAELKTQKSQMHKSVGDLSISSLKKEDLVSAKDSGTAYVQKKNRIHYSGPLVPPGGNIEDMLKEHERQIQQAFRKARFDKEKTNKSYGDQL 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 63712854 63718720 + Tan0015914.1 Tan10g2000 766794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2000 654 ProSiteProfiles Protein kinase domain profile. 157 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g2000 654 MobiDBLite consensus disorder prediction 11 26 - -
Tan10g2000 654 CDD STKc_CDK9_like 157 441 - -
Tan10g2000 654 MobiDBLite consensus disorder prediction 460 495 - -
Tan10g2000 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan10g2000 654 Gene3D Phosphorylase Kinase; domain 1 144 239 - -
Tan10g2000 654 MobiDBLite consensus disorder prediction 52 112 - -
Tan10g2000 654 FunFam probable serine/threonine-protein kinase At1g54610 144 239 - -
Tan10g2000 654 FunFam probable serine/threonine-protein kinase At1g54610 240 481 - -
Tan10g2000 654 Coils Coil 625 645 - -
Tan10g2000 654 Pfam Protein kinase domain 157 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g2000 654 SMART serkin_6 157 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g2000 654 PANTHER CELL DIVISION PROTEIN KINASE 156 441 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Tan10g2000 654 ProSitePatterns Protein kinases ATP-binding region signature. 163 186 IPR017441 GO:0005524(InterPro)
Tan10g2000 654 MobiDBLite consensus disorder prediction 447 501 - -
Tan10g2000 654 MobiDBLite consensus disorder prediction 1 40 - -
Tan10g2000 654 MobiDBLite consensus disorder prediction 80 97 - -
Tan10g2000 654 SUPERFAMILY Protein kinase-like (PK-like) 150 449 IPR011009 -
Tan10g2000 654 Gene3D Transferase(Phosphotransferase) domain 1 240 481 - -
Tan10g2000 654 Coils Coil 459 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1725 Tan-Chr10:45978376 Tan10g2000 Tan-Chr10:63712854 6.40E-94 dispersed
Tan10g2000 Tan-Chr10:63712854 Tan11g2116 Tan-Chr11:50229547 3.70E-194 dispersed
Tan10g2000 Tan-Chr10:63712854 Tan02g2173 Tan-Chr2:91072459 6.30E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68162 PF00069 Pkinase 2.80E-71 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2000 K08819 - csv:101208709 1159.44