Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2019 ATGGCTCGTGGGAAGGTTCAAATGAAGAGAATTGAGAATCCAGTGCAGAGGCAAGTGACCTTTTGCAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTGTCTGTGCTGTGCGATGCTGAAATTGGAGTTTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACAAAAGGAACGATGCAAGGGCTTATTGAAAGGTACATGATGCACTCAGCCAATAGGAATCAGCCACCAGACCCACTTATTGATAACCAAACTCTGGAAGTAAAGGAGGAGGTCAACAGGCTGAAACGAGAAATCGAAGTCCTAAAGGGTCTCAGGAATGCTTTTGGAGGAGGGATTGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTGAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCATTGAGGAACCAGGAATTAATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGGGGAAAACATTAGCAACACGACTGACATTGAACCTGTGAATATTACTAACTTTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACCTGA 621 42.67 MARGKVQMKRIENPVQRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMMHSANRNQPPDPLIDNQTLEVKEEVNRLKREIEVLKGLRNAFGGGIEGIMTLDELDMFEKQLEIWICEVRSTKMKFMCEEIEALRNQELILKAANKYLHDKMGENISNTTDIEPVNITNFQYPLTIQDELFQLCT 206
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 64378106 64390958 + Tan0015646.1 Tan10g2019 766813
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2019 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan10g2019 206 Pfam K-box region 87 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan10g2019 206 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan10g2019 206 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 ProSiteProfiles K-box domain profile. 82 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan10g2019 206 Coils Coil 89 109 - -
Tan10g2019 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2019 206 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g2019 Tan-Chr10:64378106 Tan04g1890 Tan-Chr4:61746142 3.80E-28 dispersed
Tan10g2019 Tan-Chr10:64378106 Tan10g2020 Tan-Chr10:64378615 1.20E-79 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28621 PF01486 K-box 9.50E-17 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2019 - - - 0.0