Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2030 ATGGGAAGAGGAAAAATAGAGATAAAGAGAATCGAAAACACAACAAATCGACAGGTGACATTTTGCAAGAGAAGAAATGGACTTTTAAAAAAAGCTTATGAACTCTCTGTGCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAATAACAGCATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCAGCAAAGCTGCGCCAACAAATACAAATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTCACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTACCTGCAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTTGAGAGGCTTCAGCAAGCAAACATGGTGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATGATGGAAGGTGGATCTGTCACTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGA 684 41.52 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGSVTFSHQDKKMLHLG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 64501965 64516233 + Tan0014512.2 Tan10g2030 766824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2030 227 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan10g2030 227 Pfam K-box region 86 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan10g2030 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan10g2030 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 Coils Coil 128 167 - -
Tan10g2030 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g2030 227 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan10g2030 227 FunFam agamous-like MADS-box protein AGL11 13 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g2028 Tan-Chr10:64501337 Tan10g2030 Tan-Chr10:64501965 1.10E-116 dispersed
Tan10g2030 Tan-Chr10:64501965 Tan02g2482 Tan-Chr2:93361392 6.70E-26 dispersed
Tan10g2029 Tan-Chr10:64501965 Tan10g2030 Tan-Chr10:64501965 1.10E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28624 PF01486 K-box 1.60E-23 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2030 K09264 - csv:101208072 408.297