Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2036 ATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTGATGATCGATTCGCTGGTCGCTACAATTGGTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGGTACGCTCGGGCCTACATAGATTTTACGAGACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTTGATGGGCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCAAGATCATCTACCAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCTGATTATTTGGAGTTTCTCAAAATCATTGCAAAGCCTGCTGAGCATCTTCCGAGTGCTGAAATCCAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGGCAGAAACGAGCAGTTGAAAGTGGAACTCAGGGATCTTCAGTACCTCGGAAGGTTAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAAAAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCCAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGATGCTGGTACAGCTGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCGCATTTGCAGAGCACGACATCTTCTGGGAATTCTCCTGCTAGTGCTACAAAGCAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGGAGCATTCTTTTAAATAATGAAGCACGTCATGGGCAGATTTCATCAGCAGGCCAGTCTCATCAAAAAATTCAGATCCTGAACTCGGACAATGGGAAGCGACCACCTCGTCCTATTAATGCTCGATCTGGGTCTAATGATATGTCTATTAACGAACCAAACCCATCCGGTTCAGAAGGGGATGGAAAAAGGGCTACAGAAAGTAAGTTTAATAAAAAGGAGCTTCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCGCCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGGATACCGTGGCGAAATGAAAGATGATATTCATGGAAGCAGGAGTGGGGATGCAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTCTGTTAGACATGGTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCCGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAA 1518 45.65 MKDPLERTKVVIRHLPPSLPHSDLFHHIDDRFAGRYNWCYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKIIAKPAEHLPSAEIQLERKEAEQSGVAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDAGTADSGKKKILLLKGKERDISHLQSTTSSGNSPASATKQNQRREAGGSMIRSILLNNEARHGQISSAGQSHQKIQILNSDNGKRPPRPINARSGSNDMSINEPNPSGSEGDGKRATESKFNKKELHGLGNASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLDESSVSQSSHLLSDSVEGYRGEMKDDIHGSRSGDATTVSGRSSSVENGSVRHGGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGS 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 64670304 64677955 + Tan0003232.2 Tan10g2036 766830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2036 505 MobiDBLite consensus disorder prediction 196 227 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 337 351 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 267 290 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 168 248 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 425 439 - -
Tan10g2036 505 Gene3D - 2 97 IPR012677 -
Tan10g2036 505 MobiDBLite consensus disorder prediction 357 396 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 400 422 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 440 457 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 322 505 - -
Tan10g2036 505 MobiDBLite consensus disorder prediction 229 244 - -
Tan10g2036 505 Pfam Smg-4/UPF3 family 6 168 IPR005120 -
Tan10g2036 505 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 462 IPR039722 GO:0000184(InterPro)|GO:0000184(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0005737(PANTHER)|GO:0045727(PANTHER)
Tan10g2036 505 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676(InterPro)
Tan10g2036 505 CDD RRM_like_Smg4_UPF3 9 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2036 K14328 - - csv:101208317 904.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g2036 Tan-Chr10:64670304 Tan10g2038 Tan-Chr10:64670304 1.30E-252 dispersed
Tan10g2035 Tan-Chr10:64670304 Tan10g2036 Tan-Chr10:64670304 3.40E-280 tandem
Tan10g2036 Tan-Chr10:64670304 Tan10g2037 Tan-Chr10:64670304 1.60E-250 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1817 . . . . . . . . Bhi06g00237 Tan10g2036 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49