Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2066 ATGGCTTCTTCGTCCTCTGATCCTGGCTTGAAACACGAAGCCGGTGCCTGTAGTGCCGCTGCTGCTGGAGGAGGAACGGCGGAGTCTTCGGAGGTCGTAATGGCGAATGATCATCTTTTACTGTATAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATATCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTCTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCAGCTGCTCGGGCATATGATTTGGCAGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCTGTGACTGATTATACAAGGGACCTAGAAGAAATGCAGAATGTTTCAAGAGAGGAATATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTTTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGCTGGGATCCTTCATTTGGTTGTATGTCGGGCCCTGATTACGTCAACAGCATAAATTATGGTGCTGGAGATGATCAAACAACGGAAAGCGAATTCGTTCACAGCTTCTGCATTGAAAGGAAGATTGACTTAACCAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACAGCCAGTGCTGGCTCAAAGTCCTCAGAAGAAGACAAACATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTTGGACAGACTGCCCGTCCGATGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCAAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTTCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAAAGAGAATGATGAGAATGAAAATAAAAACACTATTAACAAGATAGATCATGGGAAAGCTGTTGAAACACATACAAGTCATGGTGATGATCCCAGTGAGAGATATGGGGTTGCTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTTCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGACCCCTTGGGAGATCCGATTCATTGGACATCTCTCGTTTCCGTTCTTCCCACTGGACTTTCTCGTTCTGCGGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCCGAGGAATAA 1296 44.91 MASSSSDPGLKHEAGACSAAAAGGGTAESSEVVMANDHLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFGCMSGPDYVNSINYGAGDDQTTESEFVHSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSCAGEVGSELKALGQTARPMEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSFQEKALKLQEINKENDENENKNTINKIDHGKAVETHTSHGDDPSERYGVAFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRSAEVTKTETSSTYTLFRPEE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 66114484 66119898 + Tan0012907.1 Tan10g2066 766860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2066 431 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g2066 431 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g2066 431 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 240 - -
Tan10g2066 431 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g2066 431 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677(InterPro)
Tan10g2066 431 FunFam AP2-like ethylene-responsive transcription factor 73 142 - -
Tan10g2066 431 SMART rav1_2 74 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g2066 431 Pfam AP2 domain 75 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g2066 431 Coils Coil 309 334 - -
Tan10g2066 431 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1640 Tan-Chr10:31967562 Tan10g2066 Tan-Chr10:66114484 3.70E-243 dispersed
Tan10g1641 Tan-Chr10:31967562 Tan10g2066 Tan-Chr10:66114484 3.70E-243 dispersed
Tan10g2066 Tan-Chr10:66114484 Tan01g0439 Tan-Chr1:4062090 5.90E-07 dispersed
Tan10g2066 Tan-Chr10:66114484 Tan10g2067 Tan-Chr10:66114484 1.20E-246 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28626 PF00847 AP2 3.50E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2066 K09285 - csv:101206434 757.673