Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2095 ATGCAATCTACAACTGGTACTTGCACCGGTGCCGGTGGAACTCCAACTGGACTCGCTCGGTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCTCTTTTGGAGGACGACGAGGAGGACCCACTTAAGCCCAATCACTGCTTGACTCAGCTTCTTGCCGGGACCTCTTCCTCCGATCAGGGGTTGTTCGAACCCAATCCCTCCGCCGCCTTCCAAAGGCAGAATAGTTCTCCGGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAGGGGTTTTACTCTACCTATGCTGTCAATTCCTCGCCCACTCTCGAGATCTCTCCCACTTCCAAGCGGGGCAGAGAACTCGACGCCCAAAACTTCCCGCCCAAATTTTCACCTCACTTGGAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCTGTGCCCTGTCGGGTCAGAGCTAAGCGTGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGAAGGACTAAAATTAGTGACAGAATAAGGAAGCTTCAGGAAGTTGTCCCCAACATGGATAAGCAGACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAATATGTCAAATACCTTCAAAAGCAGATTCAGGAACTTACCGAGCATCAGCGCAGGTGCAAATGCATGGTTAAGGAATAA 699 51.65 MQSTTGTCTGAGGTPTGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAGTSSSDQGLFEPNPSAAFQRQNSSPAEFLAASGIGEGFYSTYAVNSSPTLEISPTSKRGRELDAQNFPPKFSPHLELKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKYLQKQIQELTEHQRRCKCMVKE 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 67241050 67244783 - Tan0019044.1 Tan10g2095 766889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2095 232 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983(InterPro)
Tan10g2095 232 FunFam Transcription factor bHLH130 family 163 231 - -
Tan10g2095 232 SMART finulus 168 218 IPR011598 GO:0046983(InterPro)
Tan10g2095 232 CDD bHLH_AtbHLH_like 167 219 IPR045239 -
Tan10g2095 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 229 IPR036638 GO:0046983(InterPro)
Tan10g2095 232 Gene3D - 163 232 IPR036638 GO:0046983(InterPro)
Tan10g2095 232 Coils Coil 202 222 - -
Tan10g2095 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983(InterPro)
Tan10g2095 232 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 225 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1219 Tan-Chr10:12689077 Tan10g2095 Tan-Chr10:67241050 4.80E-26 dispersed
Tan10g2095 Tan-Chr10:67241050 Tan11g1640 Tan-Chr11:15877923 7.30E-12 dispersed
Tan10g2095 Tan-Chr10:67241050 Tan09g0864 Tan-Chr9:59920924 5.80E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28628 PF00010 HLH 8.20E-11 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2095 - - - 0.0