Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2120 ATGGCGGAGGAAACCCAGAAGCCTTCTGCTGCTCCTGAAGCGCCCTCTTCTACTCAGCCTCTCCCGGAGGATACTACTACTGTGCCTCCTCCTCCTGCTCCTGCCGCTGATAAACAAGTACCTGAAACTGCACCTGCTCCGCCTCAGCCCGAACCGGAGGCTCCTCCTGCCAAGCCTGATGCCGTCGAGGAAGTTCCTGAGGCCGACAAGCCCAAGGTGGCCGAGGAGTTTGACAAGATTTCTCAGTCCGTTTCTTTCAAGGAGGAGACCAACGTTGTTGGTGAGCTTCCCGACTCACAGAGGAAGGCGCTCGCCGATCTTAAACTGCTGATTCAGGAGGCTCTTAATAAGCACGAGTTCACTGCTCCTCCCCCGGCCCCCTCACCGCCCAAGGAAGAAGAGAAGCCGGCCGAGGAGAAGAAGGAAGACCCTGAAAAGCCTGCTGAAGACTCTAAAATCGAAGAGAAATCCCAAGCTGTACCTGAGGAACAACCACCCAAGGAAGTTGTGCTCCAAGAGCCTCCCAAAACTGAACCAGAGACTGTGACGGTGATGGTAGAGGATACAATCACTCCCAATCCGGCTCCGGAGACTTCGCTGGCTCCCAAAGCCGAAGAGAAGGCGGTAGAACCATCGACGGTGGTGGAAAAAGTGGCAGTTGTCGACGAGGATGGTGCCAAGACGGTGGAAGCGATCGAGGAAACTGTAGTTGCTGTCTCGGTCCCGCCGCCGGAGGAACCAGCCCCGGCGGAAGCGGAAGTGGAAGCGGCGGAGGCTGTGCCGCCACCACCACCGGAGGAGGTTTTCATCTGGGGAATTCCTCTGCTGGGCGACGAAAGGAGCGATGTGATCCTCTTGAAATTCCTGAGAGCCAGAGATTTCAAGGTGAAGGATGCTTTCACGATGATCAAGAACGCGGTTCGTTGGCGAAAACAATTCGGGATCGAGGCTCTTCTGGATGAGGATTTGGGGAACCAGTGGGACAAAGTGGTGTTCTCCCATGGCGTCGACAGAGAAGGGCATCCAGTCTGCTACAACGTGTTCGGTGAGTTCGAGAACAAGGACTTGTATCAGATCACCTTCTCCGACGACGAAAAGAACCTCAAATTCCTCCGATGGAGGATTCAGTTTCTGGAGAAGAGCATCAGAAAGCTGGATTTCAGCCCCAGTGGCATCTCCACCATTGTTCAAGTCAACGACCTCAAAAACTCGCCTGGACTCACCAAGTGGGAGCTCAGAAACGCCACCAGGCGAGCTCTGCAACTATTCCAAGACAATTATCCTGAATTCGCTGCCAAACAGGTGTTCATCAACGTGCCATGGTGGTACTTGGCCGTGAACAGGATGATCAGCCCCTTTTTCACTCAGAGAACAAAGAGCAAATTTGTTTTTGCTGGACCATCCAAGACTGCCGAGACCCTCTTCAAATATGTTGCTCCTGAACAAGTACCAGTTCAGTACGGTGGATTAAGCAGGGAAGGCGAGCAAGAATTCTCCATTGAAGATCCTGTTACTGAAGTTGCCATAAAGGCAGCTACCAAACATACTGTTGAATTCCCAATTTCTGAGCCAAGCCTTCTGGTTTGGGAATTGAGAGTTGTGGGATGGGATGTGAGCTATGGGGCAGAGTTCTCGCCCAGTGCTGAAGGTGGGTACACTGTGATTGTACAAAAGACAACAAAGCTTGGGCCAGCTGATGAACCAGTTATCTCCAACAGCTACAGGGTTGGTGAAGCTGGTAAGATTGTGCTCACCATTGACAATTTAAGCTCCAAGAAGAAGAAGATCTTGTTGTACAGATCCAAGACCAAACCCATCTCTGATTGA 1827 52.33 MAEETQKPSAAPEAPSSTQPLPEDTTTVPPPPAPAADKQVPETAPAPPQPEPEAPPAKPDAVEEVPEADKPKVAEEFDKISQSVSFKEETNVVGELPDSQRKALADLKLLIQEALNKHEFTAPPPAPSPPKEEEKPAEEKKEDPEKPAEDSKIEEKSQAVPEEQPPKEVVLQEPPKTEPETVTVMVEDTITPNPAPETSLAPKAEEKAVEPSTVVEKVAVVDEDGAKTVEAIEETVVAVSVPPPEEPAPAEAEVEAAEAVPPPPPEEVFIWGIPLLGDERSDVILLKFLRARDFKVKDAFTMIKNAVRWRKQFGIEALLDEDLGNQWDKVVFSHGVDREGHPVCYNVFGEFENKDLYQITFSDDEKNLKFLRWRIQFLEKSIRKLDFSPSGISTIVQVNDLKNSPGLTKWELRNATRRALQLFQDNYPEFAAKQVFINVPWWYLAVNRMISPFFTQRTKSKFVFAGPSKTAETLFKYVAPEQVPVQYGGLSREGEQEFSIEDPVTEVAIKAATKHTVEFPISEPSLLVWELRVVGWDVSYGAEFSPSAEGGYTVIVQKTTKLGPADEPVISNSYRVGEAGKIVLTIDNLSSKKKKILLYRSKTKPISD 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 67572684 67575634 - Tan0021562.1 Tan10g2120 766914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2120 608 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 320 495 IPR001251 -
Tan10g2120 608 Pfam CRAL/TRIO, N-terminal domain 270 305 IPR011074 -
Tan10g2120 608 SUPERFAMILY CRAL/TRIO N-terminal domain 78 322 IPR036273 -
Tan10g2120 608 SMART CRAL_TRIO_N_2 281 306 IPR011074 -
Tan10g2120 608 SMART sec14_4 324 492 IPR001251 -
Tan10g2120 608 Gene3D GOLD domain 508 603 - -
Tan10g2120 608 MobiDBLite consensus disorder prediction 24 56 - -
Tan10g2120 608 SUPERFAMILY CRAL/TRIO domain 330 491 IPR036865 -
Tan10g2120 608 Gene3D - 273 507 IPR036865 -
Tan10g2120 608 ProSiteProfiles GOLD domain profile. 497 603 IPR009038 -
Tan10g2120 608 CDD SEC14 325 490 IPR001251 -
Tan10g2120 608 Pfam CRAL/TRIO domain 329 489 IPR001251 -
Tan10g2120 608 MobiDBLite consensus disorder prediction 57 83 - -
Tan10g2120 608 PANTHER PATELLIN-1 64 602 IPR044834 GO:0008289(InterPro)
Tan10g2120 608 MobiDBLite consensus disorder prediction 115 181 - -
Tan10g2120 608 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 504 600 IPR036598 -
Tan10g2120 608 MobiDBLite consensus disorder prediction 131 162 - -
Tan10g2120 608 MobiDBLite consensus disorder prediction 1 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2120 K19996 - - csv:101210020 910.598
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0050 Tan-Chr3:5998128 Tan10g2120 Tan-Chr10:67572684 1.50E-146 dispersed
Tan07g2214 Tan-Chr7:73543751 Tan10g2120 Tan-Chr10:67572684 1.90E-85 dispersed
Tan10g2120 Tan-Chr10:67572684 Tan11g0009 Tan-Chr11:214901 1.20E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed11g1710 . . . . . . . . Bhi06g00290 Tan10g2120 Cmetu03g2111 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000709 2 3 3 2 2 3 4 3 3 3 3 3 4 2 3 4 3 7 4 3 3 3 4 3 3 3 3 3 3 4 96