Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2129 ATGTCTCGTAGATCAACTAGGTTAGTTGAAAAAGCTAAGGAATACTTAGAGAAAACCACAAATGGCGAAACTGCAAAATCATCCCGAACCAAGAGATATGGTGTATCTGGGGGAAACCAGAAATCTTCTAGAGGGAGTCAGAAGTCGAAGCAAAATAATGAGATTAAGTTCAACGAAGTTTTGTTTTCTCCTTTACCTTCTGAGCAATTAGAGGGGAAGAAGAGAAAGACTTATAGTAAGAGTTCAGTGGTCACAAGAGCAACTGCTTCAAAGAATTTCGGGTCTGAGGGGATAAAAAAAGGGGGTGGGAGATTAAGGAAGAGGGTGTATTACAAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTAAAGAGGAGAGAAGATGCAAGCTCTGATGACGAAGATCCTGAAGTTGAGGAGTGCAGAGTGTGCTTCAAGTCTGGAAAGGCTACAATGATTGAGTGTGATGATTGCCTTGGTGGTTTTCATTTGAGGTGTTTGAAGCCGCAAATGAAGGAAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAGGAAGTTCAGTTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAACTTCTGGCGGGTGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTAAATGACAACTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGAATCCAAAAGGCTATTATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAATACGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAACGAAGAGGATAGTGAGGCAGTTGATAGTGACCAAGACTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGGGATGTGGAATATGAAGAAGAGAGAACACAACTTTTACAATCTCCAATCTGCTCAAGCTCAACCCATGAATTGGCTGCGAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCAAAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGTCGTCATTACCCAAGTCTTTACCTTGTAGGCATAAAGAAATTGAGGAGATAACTGCATTTATAGAAAGTGCCATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCGGTGATGAGGAACTTGCGGGCTAAAGTTGATACAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAACGGTCTAAAGCTGGCATCGCCAGAAAATATATACAGGGTTATATACGAAGCATTAACTGGGCACAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGCTTTTCAGATGTAAAGAATTGCAAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCGAACACCATGGACCTTCCTGAAAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACTATCAGCAACTTCAAGAAATCATTTCAAGCCGCCTTGAAGGAATTGATGCATTTGAAAAACAAGCTATTGAATTTGCATCGAGAAAGGTAGCTGCTATTTCAGGAGACGCACGTCGTTCCTTGGAGATATGTAGGCGTGCAGCTGAAATTATGGATTATGGTATAAAGAAGACGAGTTTGACGCCCAACACTGATACTAATGCAAAAACACGGGTAGGAATAGCGGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCATAGTAAGATCTTCTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTTTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGTAGGCTGGGTGAATGCAGAATTATTTTATGTGAATCAGGAGCTAAACACCGGTTGCAGAAGTTACAGCTTAATTTTCCAAGTGATGATGTCTCGTTTGCACTGAAAGACAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 2397 41.3 MSRRSTRLVEKAKEYLEKTTNGETAKSSRTKRYGVSGGNQKSSRGSQKSKQNNEIKFNEVLFSPLPSEQLEGKKRKTYSKSSVVTRATASKNFGSEGIKKGGGRLRKRVYYKKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECRVCFKSGKATMIECDDCLGGFHLRCLKPQMKEIPEGDWICGFCEATKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNDNYQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCQVMNPKGYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDNEEDSEAVDSDQDWKLDQNADSDSDGDVEYEEERTQLLQSPICSSSTHELAANSRKGRFCGLQKIGAKKIPKHIRCHKQTELERAKATLMLSSLPKSLPCRHKEIEEITAFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDTGNIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVKNCKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGIDAFEKQAIEFASRKVAAISGDARRSLEICRRAAEIMDYGIKKTSLTPNTDTNAKTRVGIAEVEAAIQEMFQAPHIQVMKSCSKHSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDSKDLPWLAKYL 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 67786380 67833662 - Tan0000372.1 Tan10g2129 766923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2129 798 SMART BAH_4 178 318 IPR001025 GO:0003682(InterPro)
Tan10g2129 798 Pfam PHD-finger 147 190 IPR019787 -
Tan10g2129 798 MobiDBLite consensus disorder prediction 322 351 - -
Tan10g2129 798 MobiDBLite consensus disorder prediction 1 20 - -
Tan10g2129 798 FunFam Origin recognition complex subunit 1 400 598 - -
Tan10g2129 798 ProSiteProfiles BAH domain profile. 203 318 IPR001025 GO:0003682(InterPro)
Tan10g2129 798 MobiDBLite consensus disorder prediction 1 60 - -
Tan10g2129 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 653 IPR027417 -
Tan10g2129 798 SMART PHD_3 146 191 IPR001965 -
Tan10g2129 798 Pfam AAA lid domain 620 653 IPR041083 -
Tan10g2129 798 FunFam Origin recognition complex subunit 1 595 687 - -
Tan10g2129 798 SMART AAA_5 443 596 IPR003593 GO:0016887(InterPro)
Tan10g2129 798 MobiDBLite consensus disorder prediction 21 58 - -
Tan10g2129 798 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 196 794 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Tan10g2129 798 SUPERFAMILY FYVE/PHD zinc finger 133 196 IPR011011 -
Tan10g2129 798 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Tan10g2129 798 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Tan10g2129 798 Gene3D - 399 598 IPR027417 -
Tan10g2129 798 Pfam BAH domain 227 316 IPR001025 GO:0003682(InterPro)
Tan10g2129 798 Pfam ATPase family associated with various cellular activities (AAA) 448 592 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan10g2129 798 Pfam CDC6, C terminal winged helix domain 693 784 IPR015163 -
Tan10g2129 798 Gene3D - 88 333 IPR043151 -
Tan10g2129 798 FunFam Origin recognition complex subunit 1 210 402 - -
Tan10g2129 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 211 IPR013083 -
Tan10g2129 798 FunFam Origin recognition complex subunit 1 142 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g2129 Tan-Chr10:67786380 Tan10g2131 Tan-Chr10:67786380 0.00E+00 dispersed
Tan10g2129 Tan-Chr10:67786380 Tan10g2130 Tan-Chr10:67786380 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28629 PF00004 AAA 4.60E-20 CL0023 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2129 K02603 - csv:101214082 1376.3