Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2130 ATGTCTCGTAGATCAACTAGGTTAGTTGAAAAAGCTAAGGAATACTTAGAGAAAACCACAAATGGCGAAACTGCAAAATCATCCCGAACCAAGAGATATGGTGTATCTGGGGGAAACCAGAAATCTTCTAGAGGGAGTCAGAAGTCGAAGCAAAATAATGAGATTAAGTTCAACGAAGTTTTGTTTTCTCCTTTACCTTCTGAGCAATTAGAGGGGAAGAAGAGAAAGACTTATAGTAAGAGTTCAGTGGTCACAAGAGCAACTGCTTCAAAGAATTTCGGGTCTGAGGGGATAAAAAAAGGGGGTGGGAGATTAAGGAAGAGGGTGTATTACAAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTAAAGAGGAGAGAAGATGCAAGCTCTGATGACGAAGATCCTGAAGTTGAGGAGTGCAGAGTGTGCTTCAAGTCTGGAAAGGCTACAATGATTGAGTGTGATGATTGCCTTGGTGGTTTTCATTTGAGGTGTTTGAAGCCGCAAATGAAGGAAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAGGAAGTTCAGTTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAACTTCTGGCGGGTGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTAAATGACAACTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGAATCCAAAAGGCTATTATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAATACGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAACGAAGAGGATAGTGAGGCAGTTGATAGTGACCAAGACTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGGGATGTGGAATATGAAGAAGAGAGAACACAACTTTTACAATCTCCAATCTGCTCAAGCTCAACCCATGAATTGGCTGCGAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCAAAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGTCGTCATTACCCAAGTCTTTACCTTGTAGGCATAAAGAAATTGAGGAGATAACTGCATTTATAGAAAGTGCCATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGGTTATATACGAAGCATTAACTGGGCACAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGCTTTTCAGATGTAAAGAATTGCAAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCGAACACCATGGACCTTCCTGAAAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACTATCAGCAACTTCAAGAAATCATTTCAAGCCGCCTTGAAGGAATTGATGCATTTGAAAAACAAGCTATTGAATTTGCATCGAGAAAGGTAGCTGCTATTTCAGGAGACGCACGTCGTTCCTTGGAGATATGTAGGCGTGCAGCTGAAATTATGGATTATGGTATAAAGAAGACGAGTTTGACGCCCAACACTGATACTAATGCAAAAACACGGGTAGGAATAGCGGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCATAGTAAGATCTTCTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTTTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGTAGGCTGGGTGAATGCAGAATTATTTTATGTGAATCAGGAGCTAAACACCGGTTGCAGAAGTTACAGCTTAATTTTCCAAGTGATGATGTCTCGTTTGCACTGAAAGACAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 2274 41.12 MSRRSTRLVEKAKEYLEKTTNGETAKSSRTKRYGVSGGNQKSSRGSQKSKQNNEIKFNEVLFSPLPSEQLEGKKRKTYSKSSVVTRATASKNFGSEGIKKGGGRLRKRVYYKKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECRVCFKSGKATMIECDDCLGGFHLRCLKPQMKEIPEGDWICGFCEATKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNDNYQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCQVMNPKGYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDNEEDSEAVDSDQDWKLDQNADSDSDGDVEYEEERTQLLQSPICSSSTHELAANSRKGRFCGLQKIGAKKIPKHIRCHKQTELERAKATLMLSSLPKSLPCRHKEIEEITAFIESAICDDQCLGRCLYIHGVPGTGKVIYEALTGHRVNWKKALQLLTKRFSDVKNCKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGIDAFEKQAIEFASRKVAAISGDARRSLEICRRAAEIMDYGIKKTSLTPNTDTNAKTRVGIAEVEAAIQEMFQAPHIQVMKSCSKHSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDSKDLPWLAKYL 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 67786380 67833662 - Tan0000372.2 Tan10g2130 766924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2130 757 SMART BAH_4 178 318 IPR001025 GO:0003682(InterPro)
Tan10g2130 757 FunFam Origin recognition complex subunit 1 554 646 - -
Tan10g2130 757 MobiDBLite consensus disorder prediction 322 351 - -
Tan10g2130 757 Pfam AAA lid domain 579 612 IPR041083 -
Tan10g2130 757 Gene3D - 459 551 IPR027417 -
Tan10g2130 757 Pfam ATPase family associated with various cellular activities (AAA) 449 551 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan10g2130 757 Gene3D - 552 643 - -
Tan10g2130 757 FunFam Origin recognition complex subunit 1 142 209 - -
Tan10g2130 757 MobiDBLite consensus disorder prediction 1 20 - -
Tan10g2130 757 ProSiteProfiles BAH domain profile. 203 318 IPR001025 GO:0003682(InterPro)
Tan10g2130 757 FunFam Origin recognition complex subunit 1 210 402 - -
Tan10g2130 757 Pfam CDC6, C terminal winged helix domain 652 743 IPR015163 -
Tan10g2130 757 Pfam PHD-finger 147 190 IPR019787 -
Tan10g2130 757 MobiDBLite consensus disorder prediction 1 60 - -
Tan10g2130 757 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 458 753 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Tan10g2130 757 SMART PHD_3 146 191 IPR001965 -
Tan10g2130 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 211 IPR013083 -
Tan10g2130 757 SUPERFAMILY FYVE/PHD zinc finger 133 196 IPR011011 -
Tan10g2130 757 MobiDBLite consensus disorder prediction 21 58 - -
Tan10g2130 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 612 IPR027417 -
Tan10g2130 757 Gene3D - 87 333 IPR043151 -
Tan10g2130 757 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Tan10g2130 757 Gene3D - 399 458 IPR027417 -
Tan10g2130 757 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Tan10g2130 757 Pfam BAH domain 227 316 IPR001025 GO:0003682(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2130 K02603 - - csv:101214082 1277.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g2130 Tan-Chr10:67786380 Tan11g0836 Tan-Chr11:6910401 3.40E-26 dispersed
Tan10g2129 Tan-Chr10:67786380 Tan10g2130 Tan-Chr10:67786380 0.00E+00 tandem
Tan10g2130 Tan-Chr10:67786380 Tan10g2131 Tan-Chr10:67786380 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g2129 . 106 798 Core DNA Replication Machinery Family AT4G14700 67.5 7.6e-274 940.6
Tan10g2131 . 140 832 Core DNA Replication Machinery Family AT4G14700 67.5 7.6e-274 940.6
Tan10g2130 . 106 757 Core DNA Replication Machinery Family AT4G14700 63.3 5.0e-249 858.2
Tan10g2129 . 73 798 Core DNA Replication Machinery Family AT4G12620 68.2 1.8e-283 972.6
Tan10g2131 . 107 832 Core DNA Replication Machinery Family AT4G12620 68.2 1.8e-283 972.6
Tan10g2130 . 73 757 Core DNA Replication Machinery Family AT4G12620 64.2 9.1e-259 890.6
Tan02g1876 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.7 1.9e-141 499.6
Tan02g1877 . 1 277 Core DNA Replication Machinery Family AT2G37560 66.1 1.3e-108 390.6
Tan04g1369 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1370 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1371 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1373 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1374 . 9 362 Core DNA Replication Machinery Family AT2G01120 66.8 4.3e-135 478.8
Tan04g1372 . 2 351 Core DNA Replication Machinery Family AT2G01120 65.5 4.9e-131 465.3
Tan04g1375 . 9 382 Core DNA Replication Machinery Family AT2G01120 58.0 3.2e-130 462.6
Tan06g2023 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2024 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2025 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2026 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan08g0428 . 50 333 Core DNA Replication Machinery Family AT1G26840 62.8 5.5e-94 341.7
Tan08g0893 . 1 282 Core DNA Replication Machinery Family AT1G26840 63.7 6.1e-93 338.2
Tan08g0895 . 1 282 Core DNA Replication Machinery Family AT1G26840 63.7 6.1e-93 338.2
Tan08g0429 . 50 311 Core DNA Replication Machinery Family AT1G26840 61.8 3.9e-84 308.9
Tan08g0894 . 1 211 Core DNA Replication Machinery Family AT1G26840 62.0 4.5e-64 242.3
Tan02g0055 . 1 798 Core DNA Replication Machinery Family AT1G79150 59.3 3.0e-249 859.0
Tan10g1476 . 1 939 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1345.5
Tan03g2685 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 8.3e-267 916.8
Tan02g0770 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.8 0.0e+00 1174.5
Tan08g0333 . 974 1708 Core DNA Replication Machinery Family AT2G07690 78.0 0.0e+00 1109.7
Tan03g2893 . 7 821 Core DNA Replication Machinery Family AT5G44635 72.2 0.0e+00 1181.8
Tan06g0728 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1210.3
Tan05g0459 . 43 468 Core DNA Replication Machinery Family AT2G29680 62.2 7.9e-152 534.6
Tan05g0460 . 43 468 Core DNA Replication Machinery Family AT2G29680 62.2 7.9e-152 534.6
Tan11g0836 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0837 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0838 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0840 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0843 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0839 . 32 434 Core DNA Replication Machinery Family AT2G29680 61.5 8.8e-143 504.6
Tan05g0461 . 43 431 Core DNA Replication Machinery Family AT2G29680 61.2 6.7e-135 478.4
Tan11g0841 . 32 406 Core DNA Replication Machinery Family AT2G29680 61.3 2.6e-131 466.5
Tan11g0842 . 32 376 Core DNA Replication Machinery Family AT2G29680 60.9 8.8e-119 424.9
Tan05g0461 . 52 430 Core DNA Replication Machinery Family AT1G07270 64.1 3.0e-137 486.1
Tan05g0459 . 52 429 Core DNA Replication Machinery Family AT1G07270 64.0 8.7e-137 484.6
Tan05g0460 . 52 429 Core DNA Replication Machinery Family AT1G07270 64.0 8.7e-137 484.6
Tan11g0841 . 32 403 Core DNA Replication Machinery Family AT1G07270 63.4 6.5e-132 468.4
Tan11g0836 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0837 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0838 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0839 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0840 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0843 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0842 . 32 376 Core DNA Replication Machinery Family AT1G07270 62.9 4.3e-120 429.1
Tan06g1260 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.3 2.7e-260 895.2
Tan08g1920 . 26 792 Core DNA Replication Machinery Family AT3G09660 75.6 0.0e+00 1128.2
Tan08g1921 . 9 661 Core DNA Replication Machinery Family AT3G09660 80.3 7.5e-298 1020.4
Tan02g1195 . 16 645 Core DNA Replication Machinery Family AT2G14050 78.5 1.3e-289 992.6
Tan02g1194 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.2e-287 985.3
Tan05g1140 . 1 411 Core DNA Replication Machinery Family AT2G20980 55.9 9.0e-119 424.5
Tan05g1141 . 1 333 Core DNA Replication Machinery Family AT2G20980 60.4 8.1e-112 401.4
Tan01g4061 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.8 2.8e-262 902.5
Tan06g0389 . 1 197 Core DNA Replication Machinery Family AT1G80190 67.0 5.9e-74 274.6
Tan06g0390 . 1 197 Core DNA Replication Machinery Family AT1G80190 67.0 5.9e-74 274.6
Tan01g0535 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 1.2e-60 229.9
Tan11g0277 . 1 184 Core DNA Replication Machinery Family AT1G19080 61.4 2.2e-59 226.1
Tan11g0278 . 1 184 Core DNA Replication Machinery Family AT1G19080 61.4 2.2e-59 226.1
Tan11g0277 . 1 184 Core DNA Replication Machinery Family AT3G55490 61.4 2.2e-59 226.1
Tan11g0278 . 1 184 Core DNA Replication Machinery Family AT3G55490 61.4 2.2e-59 226.1
Tan10g0235 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 3.3e-50 195.7
Tan05g1616 . 1 1547 Core DNA Replication Machinery Family AT5G67100 60.2 0.0e+00 1758.8
Tan04g0094 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.7 4.0e-222 768.5
Tan04g0095 . 2 590 Core DNA Replication Machinery Family AT1G67630 59.5 8.9e-206 714.1
Tan06g1509 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 2.2e-183 639.4
Tan10g1855 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan10g1856 . 117 566 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan10g1857 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan03g1272 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1800.4
Tan08g1499 . 1 438 Core DNA Replication Machinery Family AT2G42120 76.3 1.1e-205 713.4
Tan06g1509 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 2.2e-183 639.4
Tan05g0138 . 1 2094 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2974.1
Tan05g2135 . 1 1612 Core DNA Replication Machinery Family AT1G08260 66.1 0.0e+00 2120.5
Tan05g0138 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2936.7
Tan05g2135 . 1 1719 Core DNA Replication Machinery Family AT2G27120 63.7 0.0e+00 2141.7
Tan05g1723 . 7 486 Core DNA Replication Machinery Family AT5G22110 69.0 1.5e-192 669.8
Tan05g1724 . 7 486 Core DNA Replication Machinery Family AT5G22110 69.0 1.5e-192 669.8
Tan05g0066 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.6 1.1e-305 1046.6
Tan01g1944 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 1.6e-172 602.8
Tan03g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 86.4 1.6e-180 629.4
Tan03g0579 . 1 354 Core DNA Replication Machinery Family AT5G27740 86.4 1.6e-180 629.4
Tan03g0580 . 11 288 Core DNA Replication Machinery Family AT5G27740 88.1 8.3e-140 494.2
Tan03g0581 . 11 288 Core DNA Replication Machinery Family AT5G27740 88.1 8.3e-140 494.2
Tan01g4059 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.2 8.8e-152 533.9
Tan11g1257 . 1 243 Core DNA Replication Machinery Family AT1G77470 77.4 5.6e-99 358.6
Tan08g0026 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 8.2e-252 867.1
Tan01g2266 . 34 700 Core DNA Replication Machinery Family AT2G06510 50.7 7.8e-194 674.5
Tan09g2042 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 4.2e-245 844.7
Tan01g2266 . 10 802 Core DNA Replication Machinery Family AT5G45400 51.3 5.5e-222 768.5
Tan09g2042 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.3 3.1e-238 822.0
Tan01g2266 . 5 796 Core DNA Replication Machinery Family AT4G19130 52.6 5.7e-218 755.0
Tan09g0027 . 1 172 Core DNA Replication Machinery Family AT5G26680 90.7 1.2e-84 311.2
Tan09g0026 . 1 251 Core DNA Replication Machinery Family AT5G26680 62.3 6.9e-77 285.4
Tan10g0439 . 1 1113 Core DNA Replication Machinery Family AT1G08840 52.4 7.0e-296 1014.2
Tan10g1283 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-113 407.1
Tan05g0202 . 168 804 Core DNA Replication Machinery Family AT1G08130 77.6 9.0e-296 1013.4
Tan05g0202 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 6.7e-244 840.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002386 0 17 2 1 1 1 1 1 1 2 1 1 1 1 5 1 1 1 1 1 2 1 1 1 2 2 1 1 3 2 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28630 PF00004 AAA 1.40E-11 CL0023 Tan TR