Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g2131 ATGGACCCCTTCCCCCTTCCCCATCACCGGCAGCGCAGAGGAAAAAGATGCAAAGATAAGCCTCTTCCCCATGTCAAATCAAGGGCACCATTTGACACAAAGATGTCTCGTAGATCAACTAGGTTAGTTGAAAAAGCTAAGGAATACTTAGAGAAAACCACAAATGGCGAAACTGCAAAATCATCCCGAACCAAGAGATATGGTGTATCTGGGGGAAACCAGAAATCTTCTAGAGGGAGTCAGAAGTCGAAGCAAAATAATGAGATTAAGTTCAACGAAGTTTTGTTTTCTCCTTTACCTTCTGAGCAATTAGAGGGGAAGAAGAGAAAGACTTATAGTAAGAGTTCAGTGGTCACAAGAGCAACTGCTTCAAAGAATTTCGGGTCTGAGGGGATAAAAAAAGGGGGTGGGAGATTAAGGAAGAGGGTGTATTACAAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTAAAGAGGAGAGAAGATGCAAGCTCTGATGACGAAGATCCTGAAGTTGAGGAGTGCAGAGTGTGCTTCAAGTCTGGAAAGGCTACAATGATTGAGTGTGATGATTGCCTTGGTGGTTTTCATTTGAGGTGTTTGAAGCCGCAAATGAAGGAAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAGGAAGTTCAGTTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAACTTCTGGCGGGTGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTAAATGACAACTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGAATCCAAAAGGCTATTATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAATACGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAACGAAGAGGATAGTGAGGCAGTTGATAGTGACCAAGACTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGGGATGTGGAATATGAAGAAGAGAGAACACAACTTTTACAATCTCCAATCTGCTCAAGCTCAACCCATGAATTGGCTGCGAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCAAAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGTCGTCATTACCCAAGTCTTTACCTTGTAGGCATAAAGAAATTGAGGAGATAACTGCATTTATAGAAAGTGCCATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCGGTGATGAGGAACTTGCGGGCTAAAGTTGATACAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAACGGTCTAAAGCTGGCATCGCCAGAAAATATATACAGGGTTATATACGAAGCATTAACTGGGCACAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGCTTTTCAGATGTAAAGAATTGCAAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCGAACACCATGGACCTTCCTGAAAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACTATCAGCAACTTCAAGAAATCATTTCAAGCCGCCTTGAAGGAATTGATGCATTTGAAAAACAAGCTATTGAATTTGCATCGAGAAAGGTAGCTGCTATTTCAGGAGACGCACGTCGTTCCTTGGAGATATGTAGGCGTGCAGCTGAAATTATGGATTATGGTATAAAGAAGACGAGTTTGACGCCCAACACTGATACTAATGCAAAAACACGGGTAGGAATAGCGGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCATAGTAAGATCTTCTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTTTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGTAGGCTGGGTGAATGCAGAATTATTTTATGTGAATCAGGAGCTAAACACCGGTTGCAGAAGTTACAGCTTAATTTTCCAAGTGATGATGTCTCGTTTGCACTGAAAGACAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 2499 41.74 MDPFPLPHHRQRRGKRCKDKPLPHVKSRAPFDTKMSRRSTRLVEKAKEYLEKTTNGETAKSSRTKRYGVSGGNQKSSRGSQKSKQNNEIKFNEVLFSPLPSEQLEGKKRKTYSKSSVVTRATASKNFGSEGIKKGGGRLRKRVYYKKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECRVCFKSGKATMIECDDCLGGFHLRCLKPQMKEIPEGDWICGFCEATKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNDNYQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCQVMNPKGYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDNEEDSEAVDSDQDWKLDQNADSDSDGDVEYEEERTQLLQSPICSSSTHELAANSRKGRFCGLQKIGAKKIPKHIRCHKQTELERAKATLMLSSLPKSLPCRHKEIEEITAFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDTGNIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVKNCKEDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGIDAFEKQAIEFASRKVAAISGDARRSLEICRRAAEIMDYGIKKTSLTPNTDTNAKTRVGIAEVEAAIQEMFQAPHIQVMKSCSKHSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDSKDLPWLAKYL 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 67786380 67833662 - Tan0000372.3 Tan10g2131 766925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g2131 832 MobiDBLite consensus disorder prediction 23 54 - -
Tan10g2131 832 ProSiteProfiles Zinc finger PHD-type profile. 178 227 IPR019787 -
Tan10g2131 832 FunFam Origin recognition complex subunit 1 176 243 - -
Tan10g2131 832 FunFam Origin recognition complex subunit 1 629 721 - -
Tan10g2131 832 SMART AAA_5 477 630 IPR003593 GO:0016887(InterPro)
Tan10g2131 832 Pfam ATPase family associated with various cellular activities (AAA) 482 626 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan10g2131 832 SUPERFAMILY FYVE/PHD zinc finger 167 230 IPR011011 -
Tan10g2131 832 MobiDBLite consensus disorder prediction 55 92 - -
Tan10g2131 832 FunFam Origin recognition complex subunit 1 434 632 - -
Tan10g2131 832 Pfam AAA lid domain 654 687 IPR041083 -
Tan10g2131 832 SMART PHD_3 180 225 IPR001965 -
Tan10g2131 832 MobiDBLite consensus disorder prediction 356 385 - -
Tan10g2131 832 Gene3D - 433 632 IPR027417 -
Tan10g2131 832 Gene3D - 122 367 IPR043151 -
Tan10g2131 832 ProSiteProfiles BAH domain profile. 237 352 IPR001025 GO:0003682(InterPro)
Tan10g2131 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 245 IPR013083 -
Tan10g2131 832 Pfam BAH domain 261 350 IPR001025 GO:0003682(InterPro)
Tan10g2131 832 ProSitePatterns Zinc finger PHD-type signature. 181 224 IPR019786 -
Tan10g2131 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 687 IPR027417 -
Tan10g2131 832 FunFam Origin recognition complex subunit 1 244 436 - -
Tan10g2131 832 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 230 828 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Tan10g2131 832 Pfam CDC6, C terminal winged helix domain 727 818 IPR015163 -
Tan10g2131 832 Pfam PHD-finger 181 224 IPR019787 -
Tan10g2131 832 SMART BAH_4 212 352 IPR001025 GO:0003682(InterPro)
Tan10g2131 832 MobiDBLite consensus disorder prediction 1 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g2129 Tan-Chr10:67786380 Tan10g2131 Tan-Chr10:67786380 0.00E+00 dispersed
Tan10g2131 Tan-Chr10:67786380 Tan11g0836 Tan-Chr11:6910401 1.10E-33 dispersed
Tan10g2130 Tan-Chr10:67786380 Tan10g2131 Tan-Chr10:67786380 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28631 PF00004 AAA 4.90E-20 CL0023 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g2131 K02603 - csv:101214082 1376.3