Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0037 ATGATGAACCCTTCTCTCTTTCCGTTCCTCTTCCTCTTCATCTTCAACCTCGCCTCCGCCTGCTATGTCGGCGACCAAAACGCCCTTCTCGCTTTCAAATCCGCCATTACTGCCGATCCCTCCGGCATTTTAAGCTCATGGAAGTCCGGCGTCGACTGCTGCACTTGGGCCGGAGTCACTTGCTTGGTCCCCAACCGAGTCACCAGTCTCAGCCTCTATGGCCAACTCGACCGCCCCAACGCCTTCCTGTCCGGCACCATCTCCGACTCACTCTCGAACCTTCCTTACTTGGACGGAATCTACCTCGTCAACCTTCGAAACATTTCAGGTCCTTTTCCGCCTTCGCTCTTCAAACTCCCCAAGCTCCTCGTCATCTACATCGAGAACAATAGACTTTCAGGCCAATTACCGCCCGCCATCGGAAATATGACCCAACTTCAGGCACTCAGTTTTGAAGGCAACAGATTCACTGGTCCGATTCCGAGTTCAATTTCGAAATTGACTCACTTAACTCAGCTCAAACTCGGTAGCAACCTTCTCACTGGCTCAATACCGATTGGAATCCAGCAACTCAAAAGCCTGACATTCCTCAGCCTCGAACGGAATCGGTTGACCGGTCCCGTTCCTGATTTTTGGGGCTCATTTCCGGAGTTGAGGATTCTCAGACTATCTCACAATAAACTTACCGGCAAAATTCCGAGCTCAATTTCAGCTCTGGCGCCGAAGCTTGGTTACTTAGAGCTAGGGCACAATTTGCTAAGAGGGAATATCCCTGATTTTCTCGGAAATTTTAGGGCACTGGATACCCTTGATCTCTCCTCCAATTACATCTCCGGAGTTGTGCCGAAAAGCTTCAGGAATTTGACGAAAATATTCAACCTCGATCTGTCGCGAAATTCGCTGGTGGATCCGTTCCCGGAGTTGTTGGTGAAAGGAATCGAGTCGCTGGATTTGTCGTACAACAAATTTCACTTGGGGAAAATTCCGAAATGGGTGACGTCATCGCCGATAATATACTCTCTGAAATTGGCGAAATGTGGGATCAAAATGAAGCTGGAGGATTGGAAGCCGACCCAAACGTATTTCTACGATTACATTGATCTATCGGAGAATGAGATTTTGGGCAGTCCGGTCGGGTTGTTGAACCGGACGGATTATTTGGTCGGATTTTGGGGCTCCGGCAACAAGTTGAATTTCAAGCTGCAAGATTTGAGGATAGTGAAGAAGTTGAAGTACTTGGATTTGTCGAGAAATTTGGTGTCCGGTAAGGTCTCCGATGCGGTGGTGGGGCTTCAGAAATTGAACGTCAGCTACAATCATCTGTGCGGCCGGATTCCGCCGACAAAGTTCCCGGCGACGTCGTTTTTGGGGAATGATTGCTTGTGTGGCCCGCCGCTGCCGCCCTGCAAATGA 1413 49.68 MMNPSLFPFLFLFIFNLASACYVGDQNALLAFKSAITADPSGILSSWKSGVDCCTWAGVTCLVPNRVTSLSLYGQLDRPNAFLSGTISDSLSNLPYLDGIYLVNLRNISGPFPPSLFKLPKLLVIYIENNRLSGQLPPAIGNMTQLQALSFEGNRFTGPIPSSISKLTHLTQLKLGSNLLTGSIPIGIQQLKSLTFLSLERNRLTGPVPDFWGSFPELRILRLSHNKLTGKIPSSISALAPKLGYLELGHNLLRGNIPDFLGNFRALDTLDLSSNYISGVVPKSFRNLTKIFNLDLSRNSLVDPFPELLVKGIESLDLSYNKFHLGKIPKWVTSSPIIYSLKLAKCGIKMKLEDWKPTQTYFYDYIDLSENEILGSPVGLLNRTDYLVGFWGSGNKLNFKLQDLRIVKKLKYLDLSRNLVSGKVSDAVVGLQKLNVSYNHLCGRIPPTKFPATSFLGNDCLCGPPLPPCK 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 705604 707341 - Tan0004505.1 Tan11g0037 766974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0037 470 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 55 313 - -
Tan11g0037 470 SMART LRR_typ_2 215 239 IPR003591 -
Tan11g0037 470 SMART LRR_typ_2 119 143 IPR003591 -
Tan11g0037 470 SMART LRR_typ_2 191 213 IPR003591 -
Tan11g0037 470 SMART LRR_typ_2 428 457 IPR003591 -
Tan11g0037 470 SMART LRR_typ_2 264 287 IPR003591 -
Tan11g0037 470 SMART LRR_typ_2 167 190 IPR003591 -
Tan11g0037 470 Gene3D Ribonuclease Inhibitor 23 190 IPR032675 -
Tan11g0037 470 PANTHER POLYGALACTURONASE INHIBITOR 1 189 469 IPR051848 -
Tan11g0037 470 Pfam Leucine rich repeat 241 301 IPR001611 GO:0005515(InterPro)
Tan11g0037 470 Pfam Leucine rich repeat 162 204 IPR001611 GO:0005515(InterPro)
Tan11g0037 470 Pfam Leucine Rich Repeat 218 239 IPR001611 GO:0005515(InterPro)
Tan11g0037 470 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515(InterPro)
Tan11g0037 470 Pfam Leucine Rich Repeat 431 447 IPR001611 GO:0005515(InterPro)
Tan11g0037 470 Pfam Leucine Rich Repeat 313 332 IPR001611 GO:0005515(InterPro)
Tan11g0037 470 SUPERFAMILY L domain-like 314 449 - -
Tan11g0037 470 SUPERFAMILY L domain-like 20 348 - -
Tan11g0037 470 Gene3D Ribonuclease Inhibitor 193 470 IPR032675 -
Tan11g0037 470 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0037 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0037 Tan-Chr11:705604 Tan09g1193 Tan-Chr9:64274014 4.20E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26