Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0045 ATGGGCTGTGAAAGTCCCTGGCAATGCATCTCCTATTGCTATCTCATGCAGGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCGGGTTTACGTGGAAAGGCTTTGAGAATTCTACACTACTACAGGGATTCACTTTGGGAATCAGTGGAGGGTCATTATGTGCCGAATGCAGGATTTTTGGAAGATGTTGTATATGGAGATCCTGCTTTGGCATCATCATCACAAACCAAAGACTCTTGTGAAGGAACTGATGATGCTTCAAATGATGAACAGAATGACATCAGCAATAAAGAAGTTGGGGAATCTATTGATGAAACTACAAATAATGTTCTTGACGAGCCTGGCGCAGCACAGACAGATTCAACTGCTGATGAAATCGTTTCTGGTATGAATTATTTGAAGGTTGTAAATGATATTCCCACTGAGGAACCAAATGTGCAACATACACTATCGGCTGAAGATGTGGATATGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACAGTGAAAGACAAAGATTTTCCACTTCCTGGAAGCACTATATGGTCAAATCATGTATTGCCTTGTCGACCTCCTGGCATGACGCTAGACATCAAGAAATCATCCTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTACAGTGAAAGAAGACAAGCATAAAAAAGAGACGATTTTGTACTCTGTTAACCGCAAGCATCCAGACTACATGTCCTTCAAACCAGAGAAGCAACAGGTAGAGAAAATTGATCAGAGTGACAATCATGGTCCGAGAGAAAGTTCATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTGTCGCTGTGGGGGTGGACACTGGCAAACTTTACACTGCAGCAGAGGCCACTGATATTGTCTTCAAATACGTTGAGAAAGAAAGATTGGAAAAACCTACAGAAAAGTCCAGGGTGGTCTTGGACGCAATACTATGCGATGCACTATTCAAGGGGGCCATTAAAAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATTGGCTCAACATTTATCAGCCGGATGCAACCCCATCACATTGTGACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCTTTGAAAACTATTCAAATAATGACAGAGCGACGTCAAGGAAATAAGAAAGTTACGAGACTTTCTGGGTTGGAAACATTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACAACAGTGGCAGAATTGCCTGGTAAAAAAGGGTATGAAGTTTTGGTCCAAGGTGGAGTCATTGATGACTTGGCAAGACATCTGATTGAACAATATGGGATTCCAAAAAAGTACATTGAAGTACTTGATAAAACAAGGAAATGA 1437 40.99 MGCESPWQCISYCYLMQVGVTTMSSTEALKAGLRGKALRILHYYRDSLWESVEGHYVPNAGFLEDVVYGDPALASSSQTKDSCEGTDDASNDEQNDISNKEVGESIDETTNNVLDEPGAAQTDSTADEIVSGMNYLKVVNDIPTEEPNVQHTLSAEDVDMLLDKCLLQALHTTVKDKDFPLPGSTIWSNHVLPCRPPGMTLDIKKSSYKKLSKWLQAKSSTGLITVKEDKHKKETILYSVNRKHPDYMSFKPEKQQVEKIDQSDNHGPRESSSNKMLEVAEIYKPSVHVNPIFVAVGVDTGKLYTAAEATDIVFKYVEKERLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGYEVLVQGGVIDDLARHLIEQYGIPKKYIEVLDKTRK 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 738074 743970 + Tan0004864.2 Tan11g0045 766982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0045 478 Gene3D - 10 57 - -
Tan11g0045 478 MobiDBLite consensus disorder prediction 253 274 - -
Tan11g0045 478 CDD eIF2D_C 391 473 IPR039759 -
Tan11g0045 478 ProSiteProfiles Translation initiation factor SUI1 family profile. 391 463 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan11g0045 478 MobiDBLite consensus disorder prediction 74 105 - -
Tan11g0045 478 Gene3D - 387 473 - -
Tan11g0045 478 FunFam eukaryotic translation initiation factor 2D 388 472 - -
Tan11g0045 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 16 478 IPR039757 GO:0001731(InterPro)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Tan11g0045 478 SUPERFAMILY SWIB/MDM2 domain 272 373 IPR036885 -
Tan11g0045 478 ProSiteProfiles PUA domain profile. 18 45 - -
Tan11g0045 478 Pfam Translation initiation factor SUI1 389 466 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Tan11g0045 478 MobiDBLite consensus disorder prediction 253 268 - -
Tan11g0045 478 SUPERFAMILY eIF1-like 356 474 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0045 K15027 - - csv:101219792 818.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0045 Tan-Chr11:738074 Tan11g0047 Tan-Chr11:738074 2.40E-275 dispersed
Tan11g0044 Tan-Chr11:738074 Tan11g0045 Tan-Chr11:738074 7.70E-263 tandem
Tan11g0045 Tan-Chr11:738074 Tan11g0046 Tan-Chr11:738074 4.70E-263 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34