Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0078 ATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGAAATGCCTTCAGTAGTCGACTAGATACAAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCCGAGTTTATTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATTGACGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGGTGTATATACAAGCTGCATAGTAGATACCAGCCCCTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGGTCACTGAACTCAGAAAGGCGCTGCAAGTTCATATAACCGATATCGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAACCTGTTTTGCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCAGAGCGATTTTTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTGCTAAATGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAGAGCCGATATCCACAATTTGCAACAGTCGTCTCGGCAAGCTGAGGACGCTCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAATGACCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGTAATATACTGCATTTTCTTTCACAATAAATGGAGTTAA 978 43.46 MIGQQSMSSSSTQLYASRMGIYEPFHQINSWGNAFSSRLDTSISPIIKVDDCVDNKPEFIPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTSCIVDTSPLGFGGLVNPGIAAFEMEYNHWVEEQQRQVTELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKPYFEPLNEQQRADIHNLQQSSRQAEDALSQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQVIYCIFFHNKWS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 915203 919373 - Tan0013162.6 Tan11g0078 767015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0078 325 FunFam BZIP family transcription factor 80 129 - -
Tan11g0078 325 CDD bZIP_HBP1b-like 81 132 - -
Tan11g0078 325 Pfam Seed dormancy control 167 242 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan11g0078 325 SMART brlzneu 77 132 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0078 325 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0078 325 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0078 325 ProSiteProfiles DOG1 domain profile. 150 325 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan11g0078 325 SUPERFAMILY Leucine zipper domain 81 121 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0078 325 Coils Coil 249 269 - -
Tan11g0078 325 Coils Coil 161 181 - -
Tan11g0078 325 PANTHER TRANSCRIPTION FACTOR TGA9 7 313 - -
Tan11g0078 325 Gene3D - 80 129 - -
Tan11g0078 325 Coils Coil 100 127 - -
Tan11g0078 325 Pfam bZIP transcription factor 80 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0078 Tan-Chr11:915203 Tan11g1871 Tan-Chr11:24285573 8.90E-56 dispersed
Tan11g0077 Tan-Chr11:915203 Tan11g0078 Tan-Chr11:915203 9.40E-183 tandem
Tan11g0078 Tan-Chr11:915203 Tan11g0079 Tan-Chr11:915203 9.50E-175 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28639 PF14144 DOG1 8.30E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0078 K14431 - csv:101217648 569.696