Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g0078 | ATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGAAATGCCTTCAGTAGTCGACTAGATACAAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCCGAGTTTATTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATTGACGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGGTGTATATACAAGCTGCATAGTAGATACCAGCCCCTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGGTCACTGAACTCAGAAAGGCGCTGCAAGTTCATATAACCGATATCGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAACCTGTTTTGCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCAGAGCGATTTTTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTGCTAAATGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAGAGCCGATATCCACAATTTGCAACAGTCGTCTCGGCAAGCTGAGGACGCTCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAATGACCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGTAATATACTGCATTTTCTTTCACAATAAATGGAGTTAA | 978 | 43.46 | MIGQQSMSSSSTQLYASRMGIYEPFHQINSWGNAFSSRLDTSISPIIKVDDCVDNKPEFIPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTSCIVDTSPLGFGGLVNPGIAAFEMEYNHWVEEQQRQVTELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKPYFEPLNEQQRADIHNLQQSSRQAEDALSQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQVIYCIFFHNKWS | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 915203 | 919373 | - | Tan0013162.6 | Tan11g0078 | 767015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g0078 | 325 | FunFam | BZIP family transcription factor | 80 | 129 | - | - | |
Tan11g0078 | 325 | CDD | bZIP_HBP1b-like | 81 | 132 | - | - | |
Tan11g0078 | 325 | Pfam | Seed dormancy control | 167 | 242 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Tan11g0078 | 325 | SMART | brlzneu | 77 | 132 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan11g0078 | 325 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 84 | 99 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan11g0078 | 325 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 79 | 123 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan11g0078 | 325 | ProSiteProfiles | DOG1 domain profile. | 150 | 325 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Tan11g0078 | 325 | SUPERFAMILY | Leucine zipper domain | 81 | 121 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan11g0078 | 325 | Coils | Coil | 249 | 269 | - | - | |
Tan11g0078 | 325 | Coils | Coil | 161 | 181 | - | - | |
Tan11g0078 | 325 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 7 | 313 | - | - | |
Tan11g0078 | 325 | Gene3D | - | 80 | 129 | - | - | |
Tan11g0078 | 325 | Coils | Coil | 100 | 127 | - | - | |
Tan11g0078 | 325 | Pfam | bZIP transcription factor | 80 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan11g0078 | Tan-Chr11:915203 | Tan11g1871 | Tan-Chr11:24285573 | 8.90E-56 | dispersed | |
Tan11g0077 | Tan-Chr11:915203 | Tan11g0078 | Tan-Chr11:915203 | 9.40E-183 | tandem | |
Tan11g0078 | Tan-Chr11:915203 | Tan11g0079 | Tan-Chr11:915203 | 9.50E-175 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28639 | PF14144 | DOG1 | 8.30E-29 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g0078 | K14431 | - | csv:101217648 | 569.696 |