Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0201 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAGAATGGTCTGTCTGGATTTATACCTGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCTCTTGCCTTTCTTGTCACAGTCCTTCTGTTATTCATGATATTAAACTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTACGGATGTACGCAACTTGTCAACAACTTCAAGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCCATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTGAGGCTTCAACTTGCTCTGCTTGATCGGGAATTCGATGATTTAGACTACGAAACTTTGAGAGCATTGGATTCCGACAATGCTCCAACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGTGACCCCGCTGTGAATCAACAGGCTTCATCTTCAGAATCTAATGAGAAGAGACCAGATTCAGTTAATGCAGTTGGCGTTACTAAGACCTTGGAAGATGAACTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTGCATCAGTTCCATGCCAACTGCATAGATCCGTGGTTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCAGAGCGGTGTCCGGGTGGTCAGAACAGGGGCAAGGTGAAAACGATGCTTATATGGTTTAA 828 44.93 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPAVNQQASSSESNEKRPDSVNAVGVTKTLEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGENDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1690175 1692637 - Tan0008055.1 Tan11g0201 767138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0201 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 259 IPR013083 -
Tan11g0201 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Tan11g0201 275 MobiDBLite consensus disorder prediction 174 199 - -
Tan11g0201 275 SUPERFAMILY RING/U-box 207 260 - -
Tan11g0201 275 CDD RING-H2_PA-TM-RING 213 255 - -
Tan11g0201 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan11g0201 275 Pfam Ring finger domain 213 255 IPR001841 -
Tan11g0201 275 SMART ring_2 214 254 IPR001841 -
Tan11g0201 275 MobiDBLite consensus disorder prediction 177 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0201 Tan-Chr11:1690175 Tan11g0967 Tan-Chr11:7779023 5.80E-08 dispersed
Tan11g0201 Tan-Chr11:1690175 Tan08g1608 Tan-Chr8:65449384 1.20E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0201 K16283 - csv:101216306 493.812