Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0240 ATGACGACGATCGAAAACTCCTGCGTTGTCGCAATGGAAGAAGAGCAAGAAGAACGGCCTCGCCGGGTTTCTAACGCCGGCACTGACGCCTCGCCGGTTTCTGATGATGTGCGGCGGTGCTCGGGCCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGTCTCCGAGTTCTCTGTTGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCTGATTCGACCGAGCAGCGCAATGTGTCAAACGATGCAACGACAGCAACCACTGCAGCAGCTGTTGTGGTGCCACCACACTCCACAGAGGCTCAAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 651 51.31 MTTIENSCVVAMEEEQEERPRRVSNAGTDASPVSDDVRRCSGQSRAEIVGAAAAEKRRESSVSEFSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNVSNDATTATTAAAVVVPPHSTEAQNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1928095 1931431 - Tan0022186.1 Tan11g0240 767177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0240 216 MobiDBLite consensus disorder prediction 1 37 - -
Tan11g0240 216 SMART ringv_2 88 141 IPR011016 GO:0008270(InterPro)
Tan11g0240 216 SUPERFAMILY RING/U-box 86 143 - -
Tan11g0240 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Tan11g0240 216 Pfam RING-variant domain 89 140 IPR011016 GO:0008270(InterPro)
Tan11g0240 216 PANTHER ZINC FINGER, RING-CH-TYPE 16 215 - -
Tan11g0240 216 ProSiteProfiles Zinc finger RING-CH-type profile. 81 147 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0109 Tan-Chr3:20003238 Tan11g0240 Tan-Chr11:1928095 1.20E-08 dispersed
Tan03g0110 Tan-Chr3:20003238 Tan11g0240 Tan-Chr11:1928095 1.20E-08 dispersed
Tan03g2589 Tan-Chr3:79020458 Tan11g0240 Tan-Chr11:1928095 2.40E-19 dispersed
Tan08g2308 Tan-Chr8:74412886 Tan11g0240 Tan-Chr11:1928095 4.60E-21 dispersed
Tan08g2309 Tan-Chr8:74412886 Tan11g0240 Tan-Chr11:1928095 2.50E-36 dispersed
Tan11g0240 Tan-Chr11:1928095 Tan03g0855 Tan-Chr3:64748740 7.20E-46 wgd
Tan11g0240 Tan-Chr11:1928095 Tan08g2063 Tan-Chr8:72723039 5.30E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0240 - - - 0.0