Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0258 ATGGCGACGACTCAGAAAACGGTTTTGCAATTTTCACTGTCTTCTAACACTTTATCTGCCAAGGTTCACCCTCTGGTTGTCTTCAACATTTGTGATTGTTATGTGAGGCGCCCGGACCAGGCGGACAGAGTGATCGGTACTCTTCTCGGCTCTGTGTTACCTGATGGAACCATTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCACCACAATATGTTAATCTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCCTCGGATGGTACTCGACTGGTACAGGAGTTACGGGTGGCAGTGCATTGATACACGAATTCTATTCTAGAGAAGTTGCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGGACAATAAAAGCCTATACCTCTGTCAATTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATATTGAAGACTACATCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGATGATATTTACAAATATGTTGATAATGTTGTGGAAGGGCATGTTGAGCCAGACAACACGATTGGGAGATTTCTAGCCGACACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGTTGTTGCTGTATTTGTCGAGCATCACCAGGACACAACTGAGCTTGGCCGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 42.19 MATTQKTVLQFSLSSNTLSAKVHPLVVFNICDCYVRRPDQADRVIGTLLGSVLPDGTIDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEVILGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYTSVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2048408 2051370 - Tan0007320.1 Tan11g0258 767195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0258 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Tan11g0258 285 Gene3D Cytidine Deaminase, domain 2 8 186 - -
Tan11g0258 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Tan11g0258 285 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Tan11g0258 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Tan11g0258 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Tan11g0258 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan11g0258 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan11g0258 285 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0085 Tan-Chr6:893148 Tan11g0258 Tan-Chr11:2048408 2.30E-153 dispersed
Tan06g0086 Tan-Chr6:893148 Tan11g0258 Tan-Chr11:2048408 2.30E-153 dispersed
Tan11g0258 Tan-Chr11:2048408 Tan03g0817 Tan-Chr3:64402423 9.60E-30 wgd
Tan11g0258 Tan-Chr11:2048408 Tan08g2100 Tan-Chr8:72941318 3.10E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0258 K03249 - csv:101205957 546.199