Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0292 ATGAGAGGTTGCCATGAAACTCGATCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAAAGAAGATGCACTCCCACTTGCATATTTGCCCCTTATTTTAGGTCTGATGAGCCTAAGAAATTTGCCAAAGTTCACAAAGTTTTTGGAGCCAGTAATGTGAGCAAGATTCTGACTGAGGTTCCTGAAGAACAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAAGCCAGGCTGAGAGATCCTGTTTATGGCTGCATCGGCGCCATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTTGCTCGTTATGCTCATAATTCTAATCATACTAATGCTTCTTCTTCTAATTTTAATTCTAATTCTTCTTCTTTGGGTGTTTTGGAAAGTTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTTCAACTTCTGATATCTCCCAATATGGATATTTATGTGACTTTGCCCATTTTCCTTATCCTTTTAAAGCTTGA 546 40.66 MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYAHNSNHTNASSSNFNSNSSSLGVLESCVVNMSYGGLSFSGQSSSTSDISQYGYLCDFAHFPYPFKA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2308414 2309196 - Tan0004516.1 Tan11g0292 767229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0292 181 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Tan11g0292 181 Coils Coil 91 118 - -
Tan11g0292 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 129 - -
Tan11g0292 181 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0292 Tan-Chr11:2308414 Tan11g0653 Tan-Chr11:5740323 7.40E-36 dispersed
Tan11g0292 Tan-Chr11:2308414 Tan07g1392 Tan-Chr7:64748048 1.00E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28651 PF03195 LOB 4.60E-39 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0292 - - - 0.0