Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g0292 | ATGAGAGGTTGCCATGAAACTCGATCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAAAGAAGATGCACTCCCACTTGCATATTTGCCCCTTATTTTAGGTCTGATGAGCCTAAGAAATTTGCCAAAGTTCACAAAGTTTTTGGAGCCAGTAATGTGAGCAAGATTCTGACTGAGGTTCCTGAAGAACAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAAGCCAGGCTGAGAGATCCTGTTTATGGCTGCATCGGCGCCATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTTGCTCGTTATGCTCATAATTCTAATCATACTAATGCTTCTTCTTCTAATTTTAATTCTAATTCTTCTTCTTTGGGTGTTTTGGAAAGTTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTTCAACTTCTGATATCTCCCAATATGGATATTTATGTGACTTTGCCCATTTTCCTTATCCTTTTAAAGCTTGA | 546 | 40.66 | MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYAHNSNHTNASSSNFNSNSSSLGVLESCVVNMSYGGLSFSGQSSSTSDISQYGYLCDFAHFPYPFKA | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2308414 | 2309196 | - | Tan0004516.1 | Tan11g0292 | 767229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g0292 | 181 | ProSiteProfiles | LOB domain profile. | 11 | 112 | IPR004883 | - | |
Tan11g0292 | 181 | Coils | Coil | 91 | 118 | - | - | |
Tan11g0292 | 181 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 129 | - | - | |
Tan11g0292 | 181 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 109 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan11g0292 | Tan-Chr11:2308414 | Tan11g0653 | Tan-Chr11:5740323 | 7.40E-36 | dispersed | |
Tan11g0292 | Tan-Chr11:2308414 | Tan07g1392 | Tan-Chr7:64748048 | 1.00E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28651 | PF03195 | LOB | 4.60E-39 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g0292 | - | - | - | 0.0 |