Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0296 ATGACACCAGTGACAACTGAGAGGAAGAGGAAGTCACGGAGTAGACGTGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTTCATTCTTGTAATGATGGAGGCAAGTCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAAGGAGGACCCTTGAATTCGCATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGAGGAAGTAGGCTGTGGCTTGGTACCTTCCCTACTGCGATTGAAGCCGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGCCAGAGTGCTCGTTTGAACCTTCCCAACATCACAAACAGAGGGCAGCTAAAGGGGATTCTTTTGGAGGATTATTTGGGGCTACGTAATTCAGATTCTTCAACTGCTACTTCGATGAGTTCTGAATCGACAACAACTGTGTCGAACCAATCTGAGGTCTGTGTGCCTGAGGAGTTCACAACGAGGCCACAACTTGTTCCCTCAAACGTTAAGATTGAAGATGGAGAAGGTGAGTCGAGAATTGGGAATCCAGTTGATCACATTGCGATACCGATGAGCTTAGAGAAGCAAGTGAAGCATGAAGATGTGGATGCTAAATATCGTGAGCAAAGCAATGATCAAGCAGTTCTGTTAGGAATTGAGTTTCCTAGTTTGGATCAGTGGCCGAACTTTCAAACCGATGAAATGTTCGAGTCGAGGACCGGGAATCATTCAGATCACACTGCAAAGCCGATGAGCTTAGAGAAGCAAATGAAGCATGAAGATGTCGATGCTACATATCTTGATCAGAGCAATGATCAAGCAATCTTATTAGGCACAGAGATTCCTGGTTTGGATGAGCTGCAAAACCTTCAGATAGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTTATAAATGGTTATTCCATGCATGATCAAAGCTTCTTGCAGGGCAATGTGGACGGTTCTTATAAAATGGCGCCTTCTCAAGTTGGCAACCTTGGGTCTGAGAAACCATCAAGCTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGCCTCCAACACATGGAGGATGCTCCAGCCGATGTCGATTATGGATTCGATTTCTTGAAACAGGGGAGGGAGGAGGATCTGAATGCTGCAGCGGATGATTGTGTAAGATACCTAAATTATGAGATGGGCGATTTGGGTTTTTGA 1266 45.89 MTPVTTERKRKSRSRRDRSTVAETLAKWKAYNECVHSCNDGGKSIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPNITNRGQLKGILLEDYLGLRNSDSSTATSMSSESTTTVSNQSEVCVPEEFTTRPQLVPSNVKIEDGEGESRIGNPVDHIAIPMSLEKQVKHEDVDAKYREQSNDQAVLLGIEFPSLDQWPNFQTDEMFESRTGNHSDHTAKPMSLEKQMKHEDVDATYLDQSNDQAILLGTEIPGLDELQNLQIDEMFDVEELLGLINGYSMHDQSFLQGNVDGSYKMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEDAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2356250 2358750 - Tan0014325.2 Tan11g0296 767233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0296 421 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 354 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Tan11g0296 421 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0296 421 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Tan11g0296 421 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0296 421 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0296 421 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0296 421 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0296 421 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Tan11g0296 421 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g0296 421 MobiDBLite consensus disorder prediction 150 172 - -
Tan11g0296 421 Pfam AP2 domain 70 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4974 Tan-Chr1:115526265 Tan11g0296 Tan-Chr11:2356250 9.30E-30 dispersed
Tan02g2020 Tan-Chr2:89445874 Tan11g0296 Tan-Chr11:2356250 1.90E-30 dispersed
Tan05g0842 Tan-Chr5:6576367 Tan11g0296 Tan-Chr11:2356250 1.50E-49 dispersed
Tan08g1423 Tan-Chr8:58148818 Tan11g0296 Tan-Chr11:2356250 2.10E-25 dispersed
Tan11g0296 Tan-Chr11:2356250 Tan02g0906 Tan-Chr2:10300919 5.60E-18 dispersed
Tan11g0291 Tan-Chr11:2285809 Tan11g0296 Tan-Chr11:2356250 1.80E-19 proximal
Tan11g0296 Tan-Chr11:2356250 Tan11g0297 Tan-Chr11:2356615 4.40E-241 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28652 PF00847 AP2 1.00E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0296 K09286 - csv:101215431 572.778