Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0331 ATGGCGACCTTACCAATCTCTCTTCTTTCAATTCTGCTCCTAATTTTCCTCCCTGCAATCTCCGCCGACTACGGCGGACTGCAGTCGGCCCACGCCACATTCTACGGCGGTGGCGACGCGTCCGGGACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGATATGGGACGAACACGGCGGCGCTGAGTACGGCTCTGTTTAACAATGGACTGAGCTGTGGTTCTTGCTATGAGATTAGTTGCAGTAGTGATCCCAAGTGGTGTCTTCCTGGAAAAATTACGGTCACTGCTACTAATTTTTGCCCGCCTAACTTAGCTCTGTCCAACGACAATGGCGGCTGGTGTAACCCTCCTCTGCAGCACTTTGATTTGGCTCAACCTGCTTTTCTTCAGATTGCTCAGTACCGTGCTGGCATCGTTCCTGTCTCCTTCCGAAGAGTACCATGCGTGAAGAAGGGAGGAATAAGGTTCACGATCAACGGTCATTCATATTTCAACTTGGTACTAATCACCAACGTCGGCGGCGCCGGCGACGTCCACTCGGTGTCGATCAAAGGATCCAAAACCGGATGGCAAGCCATGTCCAGAAACTGGGGACAGAACTGGCAGAGCAACAATTACTTGAACGGACAGAGCCTCTCTTTCCAAGTTACCACCAGCGACGGCCGCACCGTCACCAGCTACAACGCCGTTCCGGCCAACTGGCAGTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTGA 750 53.47 MATLPISLLSILLLIFLPAISADYGGLQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEISCSSDPKWCLPGKITVTATNFCPPNLALSNDNGGWCNPPLQHFDLAQPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYNAVPANWQFGQTFEGAQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2588227 2589882 - Tan0008850.1 Tan11g0331 767268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0331 249 Gene3D - 18 152 IPR036908 -
Tan11g0331 249 SMART dpbb_1 62 147 IPR007112 -
Tan11g0331 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Tan11g0331 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Tan11g0331 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Tan11g0331 249 Gene3D - 156 249 IPR036749 -
Tan11g0331 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Tan11g0331 249 CDD DPBB_EXPA_N 26 152 - -
Tan11g0331 249 SUPERFAMILY Barwin-like endoglucanases 14 175 IPR036908 -
Tan11g0331 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Tan11g0331 249 FunFam Expansin 18 153 - -
Tan11g0331 249 PANTHER EXPANSIN-A15 11 249 IPR002963 GO:0009664(InterPro)
Tan11g0331 249 FunFam Expansin 157 249 - -
Tan11g0331 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Tan11g0331 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Tan11g0331 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Tan11g0331 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Tan11g0331 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Tan11g0331 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2829 Tan-Chr2:96574006 Tan11g0331 Tan-Chr11:2588227 4.20E-93 dispersed
Tan09g2108 Tan-Chr9:71460094 Tan11g0331 Tan-Chr11:2588227 2.00E-108 dispersed
Tan11g0331 Tan-Chr11:2588227 Tan11g0502 Tan-Chr11:4239859 1.10E-101 dispersed
Tan11g0331 Tan-Chr11:2588227 Tan04g1418 Tan-Chr4:16418460 1.40E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0331 - - - 0.0