Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0414 ATGGGTGCTGTCTGCTGCTGTTTGAGTGTGGAGGATTTTGAAGACTATGTCAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAATGCTTACACGTTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCTTCAGCATCAATAGATAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCGTTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAATCAGAACCTCTAAGAAGTGAAGCAGATACAGATTCAGATTCTATGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTCGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA 684 42.11 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGATSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3323929 3328875 + Tan0019447.1 Tan11g0414 767351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0414 227 SMART ring_2 177 217 IPR001841 -
Tan11g0414 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Tan11g0414 227 Pfam Ring finger domain 176 217 IPR001841 -
Tan11g0414 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 223 - GO:0004842(PANTHER)
Tan11g0414 227 MobiDBLite consensus disorder prediction 103 132 - -
Tan11g0414 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Tan11g0414 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Tan11g0414 227 SUPERFAMILY RING/U-box 171 223 - -
Tan11g0414 227 CDD RING-H2_AIRP1-like 173 221 - -
Tan11g0414 227 MobiDBLite consensus disorder prediction 103 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0412 Tan-Chr11:3323558 Tan11g0414 Tan-Chr11:3323929 2.00E-131 dispersed
Tan11g0413 Tan-Chr11:3323558 Tan11g0414 Tan-Chr11:3323929 3.00E-101 tandem
Tan11g0414 Tan-Chr11:3323929 Tan11g0415 Tan-Chr11:3323929 4.80E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0414 - - - 0.0