Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0502 ATGGCTTCACTGGGGATAATTCTAGTGGGTGTTTTTTTTATGGCGTCGTGTGTTAATGGCGATTTTGGTGGTTGGATTAACGCTCATGCCACTTTCTATGGTGGCAGCGATGCTTCAGGGACAATGGGTGGTGCTTGTGGGTACGGGAATTTATACAGCCAAGGGTATGGGACGAACACGGCGGCGCTGAGCACGGCGCTGTTTGACAATGGGCTAAGCTGTGGGGCTTGCTTTGAGCTGCGGTGTGTGAATGATCCACAGTGGTGTATTCCAGGCACCATTGTCGTCACTGCCACTAATTTTTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCACCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGGATCGTCCCCGTCGCTTATCGGAGGGTGAGGTGCAGAAGAAGTGGGGGAATAAGATTTACAATCAACGGCCATTCATACTTCAACTTGGTGTTGGTCACCAACGTGGGCGGTGCCGGAGATGTGCATGCGGTGGCCATAAAGGGTTCAAAAACCCGATGGCAACCCATGTCAAGAAATTGGGGTCAAAACTGGCAGTCCAATTCTTATCTCAACGGACAGACCCTCTCCTTTCTGGTCACAGCTAGCGACGGACGACAAGTCCTGTCCTACAACGTTGCTCCCTCTGCCTGGTCCTTCGGACAAACCTATGTCGGCCAACAGTTTCGCTACTAA 726 52.48 MASLGIILVGVFFMASCVNGDFGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQTLSFLVTASDGRQVLSYNVAPSAWSFGQTYVGQQFRY 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4239859 4241630 + Tan0017408.1 Tan11g0502 767439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0502 241 Pfam Lytic transglycolase 60 137 IPR009009 -
Tan11g0502 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Tan11g0502 241 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 82 93 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 55 69 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 FunFam Expansin 147 239 - -
Tan11g0502 241 PANTHER EXPANSIN-A15 9 239 IPR002963 GO:0009664(InterPro)
Tan11g0502 241 CDD DPBB_EXPA_N 24 142 - -
Tan11g0502 241 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Tan11g0502 241 Gene3D - 147 239 IPR036749 -
Tan11g0502 241 SUPERFAMILY Barwin-like endoglucanases 9 165 IPR036908 -
Tan11g0502 241 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Tan11g0502 241 SMART dpbb_1 60 137 IPR007112 -
Tan11g0502 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Tan11g0502 241 Gene3D - 14 143 IPR036908 -
Tan11g0502 241 FunFam Expansin 15 143 - -
Tan11g0502 241 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Tan11g0502 241 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
Tan11g0502 241 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576(InterPro)
Tan11g0502 241 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Tan11g0502 241 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Tan11g0502 241 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2109 Tan-Chr9:71460094 Tan11g0502 Tan-Chr11:4239859 1.70E-110 dispersed
Tan11g0331 Tan-Chr11:2588227 Tan11g0502 Tan-Chr11:4239859 1.10E-101 dispersed
Tan11g0502 Tan-Chr11:4239859 Tan11g0699 Tan-Chr11:6079714 9.70E-92 dispersed
Tan11g0502 Tan-Chr11:4239859 Tan04g1065 Tan-Chr4:9555230 6.00E-110 wgd
Tan11g0502 Tan-Chr11:4239859 Tan05g2430 Tan-Chr5:75460904 6.90E-98 wgd
Tan11g0502 Tan-Chr11:4239859 Tan09g2108 Tan-Chr9:71460094 1.90E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0502 K20628 - csv:101220358 463.766