Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0514 ATGTTTAGAGAGGTTTGTGTTTTTGAGAGAGCCATGGATTTAGCCCCAGCTGCTATCACTACTAGTAGTAATAACACCAAATCTCCGGAAGCCGAGAGTGATACTCCGACGAGGATCCCGCCCTCCTCCGCCAAATCGCTGCCCTTCAGCAACGGCGTTCTCAAGCGCCACCACTCCCACTCCCACCCCCGTCAACCGCCGCCTCAACCGGTGGTTGTTACTTATAAAGAATGTCTCAAAAATCACGCGGCCAGCTTAGGAGCTCACGCTTTAGACGGATGTGGGGAATTTATGCCCTCCCCTTCTGCGACGCCCACCGATCCCACTTCGCTCAAGTGCGCTGCTTGCGGCTGTCACCGGAATTTCCACCGTCGAGAGCCCGAGGACCCAATTTCGACGTTGGCAATCAATACGGCGGCGACTCATGTGATTGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCGCCGCTGGCTGGCAATCGGAGCCCGAATTCGGCGTCGCCGCCGCCGATCTCGTCGTCGTACTATCCATCAGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACAGGCGAATTCGGTACTGACGCCGAGTCCAAACGCGCGAAAACGATTCAGGACGAAATTCACGAACGAGCAGAAGGAAAAAATGCTCGAGTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACTGAATCTAATGGCGCCGCTGCCACTCCCGCCACCACCGCCACCGCCGCCCCCGCAACCGCCGCCGTCAACAACGATGAAGATGGAGCAGATCATGGTGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 972 55.25 MFREVCVFERAMDLAPAAITTSSNNTKSPEAESDTPTRIPPSSAKSLPFSNGVLKRHHSHSHPRQPPPQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPEDPISTLAINTAATHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQANSVLTPSPNARKRFRTKFTNEQKEKMLEFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTESNGAAATPATTATAAPATAAVNNDEDGADHGGLHMHVGSNGSSSSS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4353834 4355466 + Tan0002620.1 Tan11g0514 767451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0514 323 MobiDBLite consensus disorder prediction 196 212 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 19 70 - -
Tan11g0514 323 FunFam Zinc-finger homeodomain protein 2 200 274 - -
Tan11g0514 323 SUPERFAMILY Homeodomain-like 207 274 IPR009057 -
Tan11g0514 323 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 126 IPR006456 -
Tan11g0514 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 126 IPR006456 -
Tan11g0514 323 MobiDBLite consensus disorder prediction 271 323 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 271 295 - -
Tan11g0514 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 271 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan11g0514 323 MobiDBLite consensus disorder prediction 147 176 - -
Tan11g0514 323 Gene3D - 200 274 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 19 49 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 189 212 - -
Tan11g0514 323 Pfam ZF-HD protein dimerisation region 73 127 IPR006456 -
Tan11g0514 323 NCBIfam homeobox domain, ZF-HD class 213 270 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0514 Tan-Chr11:4353834 Tan11g2213 Tan-Chr11:61205966 3.80E-35 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan11g0515 Tan-Chr11:4381257 1.60E-12 tandem
Tan07g1215 Tan-Chr7:49924779 Tan11g0514 Tan-Chr11:4353834 4.40E-78 transposed
Tan05g2155 Tan-Chr5:72287668 Tan11g0514 Tan-Chr11:4353834 1.60E-30 transposed
Tan11g0514 Tan-Chr11:4353834 Tan04g1081 Tan-Chr4:9709979 2.60E-52 wgd
Tan11g0514 Tan-Chr11:4353834 Tan05g2442 Tan-Chr5:75562217 4.10E-13 wgd
Tan11g0514 Tan-Chr11:4353834 Tan09g2126 Tan-Chr9:71530229 3.20E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28667 PF04770 ZF-HD_dimer 3.60E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0514 - - - 0.0