Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0514 ATGTTTAGAGAGGTTTGTGTTTTTGAGAGAGCCATGGATTTAGCCCCAGCTGCTATCACTACTAGTAGTAATAACACCAAATCTCCGGAAGCCGAGAGTGATACTCCGACGAGGATCCCGCCCTCCTCCGCCAAATCGCTGCCCTTCAGCAACGGCGTTCTCAAGCGCCACCACTCCCACTCCCACCCCCGTCAACCGCCGCCTCAACCGGTGGTTGTTACTTATAAAGAATGTCTCAAAAATCACGCGGCCAGCTTAGGAGCTCACGCTTTAGACGGATGTGGGGAATTTATGCCCTCCCCTTCTGCGACGCCCACCGATCCCACTTCGCTCAAGTGCGCTGCTTGCGGCTGTCACCGGAATTTCCACCGTCGAGAGCCCGAGGACCCAATTTCGACGTTGGCAATCAATACGGCGGCGACTCATGTGATTGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCGCCGCTGGCTGGCAATCGGAGCCCGAATTCGGCGTCGCCGCCGCCGATCTCGTCGTCGTACTATCCATCAGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACAGGCGAATTCGGTACTGACGCCGAGTCCAAACGCGCGAAAACGATTCAGGACGAAATTCACGAACGAGCAGAAGGAAAAAATGCTCGAGTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACTGAATCTAATGGCGCCGCTGCCACTCCCGCCACCACCGCCACCGCCGCCCCCGCAACCGCCGCCGTCAACAACGATGAAGATGGAGCAGATCATGGTGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 972 55.25 MFREVCVFERAMDLAPAAITTSSNNTKSPEAESDTPTRIPPSSAKSLPFSNGVLKRHHSHSHPRQPPPQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPEDPISTLAINTAATHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQANSVLTPSPNARKRFRTKFTNEQKEKMLEFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTESNGAAATPATTATAAPATAAVNNDEDGADHGGLHMHVGSNGSSSSS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4353834 4355466 + Tan0002620.1 Tan11g0514 767451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0514 323 MobiDBLite consensus disorder prediction 196 212 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 19 70 - -
Tan11g0514 323 FunFam Zinc-finger homeodomain protein 2 200 274 - -
Tan11g0514 323 SUPERFAMILY Homeodomain-like 207 274 IPR009057 -
Tan11g0514 323 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 126 IPR006456 -
Tan11g0514 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 126 IPR006456 -
Tan11g0514 323 MobiDBLite consensus disorder prediction 271 323 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 271 295 - -
Tan11g0514 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 271 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan11g0514 323 MobiDBLite consensus disorder prediction 147 176 - -
Tan11g0514 323 Gene3D - 200 274 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 19 49 - -
Tan11g0514 323 MobiDBLite consensus disorder prediction 189 212 - -
Tan11g0514 323 Pfam ZF-HD protein dimerisation region 73 127 IPR006456 -
Tan11g0514 323 NCBIfam homeobox domain, ZF-HD class 213 270 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0514 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0514 Tan-Chr11:4353834 Tan11g2213 Tan-Chr11:61205966 3.80E-35 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan11g0515 Tan-Chr11:4381257 1.60E-12 tandem
Tan07g1215 Tan-Chr7:49924779 Tan11g0514 Tan-Chr11:4353834 4.40E-78 transposed
Tan05g2155 Tan-Chr5:72287668 Tan11g0514 Tan-Chr11:4353834 1.60E-30 transposed
Tan11g0514 Tan-Chr11:4353834 Tan04g1081 Tan-Chr4:9709979 2.60E-52 wgd
Tan11g0514 Tan-Chr11:4353834 Tan05g2442 Tan-Chr5:75562217 4.10E-13 wgd
Tan11g0514 Tan-Chr11:4353834 Tan09g2126 Tan-Chr9:71530229 3.20E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28667 PF04770 ZF-HD_dimer 3.60E-29 No_clan Tan TF