Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0515 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCATCAAGAGACACTGTGGCTTCATCTTTCACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCACGCCGCCGGAGTCGGAGGGTATGCTGTCGACGGGTGCCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCCGCCTGCGGTTGCCACCGGAGCTTCCATAGAAGACAAGTTGGAACTGAGGTAGTCTGTGATTGCTCTTCATCTCCCTCAAATGGAACTTGA 291 52.92 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRSFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4381257 4382124 + Tan0016977.1 Tan11g0515 767452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0515 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan11g0515 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Tan11g0515 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Tan11g0515 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0515 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2442 Tan-Chr5:75562217 Tan11g0515 Tan-Chr11:4381257 5.10E-26 dispersed
Tan09g2126 Tan-Chr9:71530229 Tan11g0515 Tan-Chr11:4381257 5.20E-25 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan11g0515 Tan-Chr11:4381257 1.60E-12 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan11g0515 . 1 95 Zinc finger-homeobox gene family AT3G28917 80.8 2.0e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28668 PF04770 ZF-HD_dimer 7.90E-30 No_clan Tan TF