Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0515 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCATCAAGAGACACTGTGGCTTCATCTTTCACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCACGCCGCCGGAGTCGGAGGGTATGCTGTCGACGGGTGCCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCCGCCTGCGGTTGCCACCGGAGCTTCCATAGAAGACAAGTTGGAACTGAGGTAGTCTGTGATTGCTCTTCATCTCCCTCAAATGGAACTTGA 291 52.92 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRSFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4381257 4382124 + Tan0016977.1 Tan11g0515 767452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0515 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan11g0515 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Tan11g0515 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Tan11g0515 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2442 Tan-Chr5:75562217 Tan11g0515 Tan-Chr11:4381257 5.10E-26 dispersed
Tan09g2126 Tan-Chr9:71530229 Tan11g0515 Tan-Chr11:4381257 5.20E-25 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan11g0515 Tan-Chr11:4381257 1.60E-12 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28668 PF04770 ZF-HD_dimer 7.90E-30 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0515 - - - 0.0