Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0523 ATGTCACGACAGCCTCCGACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAACGTCCCCTCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACGATGTTCACTGTCTACTATAAACCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACAATAGGAATGAGGTTTAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACGGGTACTATCATTGGGTCTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACTTCTACTATTTCTCGTCCAGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCCCTTCCAATGACTAGACCTAAAAGGCCTCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAATGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATTGATGGCAATGAGCCTGATGCTGCTGAAAAATCTGTTATGTGGCCGCCTTCACTAGATGATGAGAAGATTGATGTGGTTTCTACATCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGAGGTGAGCCAACCTACGCCGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGTGTCCGGGCTGCCATGGGAGATCCAACAATAGTAACTGGTAATTCGATCAGAAAGCATGTATTGGATCAGGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCACTCAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGCCTGGTGACTTACCTTATCAAGTGAGAGGAAATGCTACCTTTAATGGCTTTGGTGATCATTCCATGGCCCATTGTTATAGAATTGAACAGCCTAATGGAAATTGGTTGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAGCTGAACTGATGTCAAAACCTATGTTATTTCAGAACCAAGATATTTTGAAACCCAAAGATGGAAATTGTAAACTTTTTGGCATCTCACTCATTAAAAATCCTGCTATTTCAGAGCCTGCAGGACTGAATAGAAATATGATGAACGAGGCAGATGTTATACATCCTAATATACATCAAATCCATTCGAACGAGTCTGACCTCAAGTCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCGTTGCCATCAATGAGGCTGATAAGTCCCAGCAAACATGCACACTGAACTCGAAGGATGCACAGAGCAAATCACAGGGTTGTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTCGATCTTAGCAAGTTCAACAATTATGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGCGAGTTGCTGCCTCCCAAAAAGAATTGGCGTATTGTATACATGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGAAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAACGTTAAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGCCAGAAGGTTGCGGCCTTATGTTAACATATTTGCTGCCCTTTATGCGATGCCAATGGGCAAGGCAGAAGGAGGAGAAGAAGAAGAAGAAGTCTGA 2082 44.19 MSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGSEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRMTVDPSPASAFTRVLQGQEFSTLRGNFIDGNEPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRGEPTYADLLSGFGANIDSSCGVRAAMGDPTIVTGNSIRKHVLDQDGKFNFLGGSSWSVLPSGLSLNLVDSSQKAHIQPGDLPYQVRGNATFNGFGDHSMAHCYRIEQPNGNWLMPPPSSHFDYPVHSAELMSKPMLFQNQDILKPKDGNCKLFGISLIKNPAISEPAGLNRNMMNEADVIHPNIHQIHSNESDLKSELSRGSKLADKSVAINEADKSQQTCTLNSKDAQSKSQGCSTRSCTKVHKQGIALGRSVDLSKFNNYDELVAELDQLFEFGGELLPPKKNWRIVYMDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLTLKGDENPSVEGEEAKEIKSQAARRLRPYVNIFAALYAMPMGKAEGGEEEEEV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4476529 4480573 - Tan0017834.1 Tan11g0523 767460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0523 693 Pfam AUX/IAA family 594 635 IPR033389 -
Tan11g0523 693 Pfam AUX/IAA family 529 583 IPR033389 -
Tan11g0523 693 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677(InterPro)
Tan11g0523 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 637 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g0523 693 CDD B3_DNA 5 70 IPR003340 GO:0003677(InterPro)
Tan11g0523 693 MobiDBLite consensus disorder prediction 204 245 - -
Tan11g0523 693 SUPERFAMILY CAD & PB1 domains 540 624 - -
Tan11g0523 693 Pfam B3 DNA binding domain 6 71 IPR003340 GO:0003677(InterPro)
Tan11g0523 693 FunFam Auxin response factor 542 636 - -
Tan11g0523 693 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
Tan11g0523 693 SMART B3_2 1 72 IPR003340 GO:0003677(InterPro)
Tan11g0523 693 Gene3D - 133 203 - -
Tan11g0523 693 Gene3D - 543 636 - -
Tan11g0523 693 ProSiteProfiles PB1 domain profile. 547 631 IPR053793 -
Tan11g0523 693 MobiDBLite consensus disorder prediction 219 245 - -
Tan11g0523 693 Pfam Auxin response factor 96 178 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g0523 693 Gene3D - 1 72 IPR015300 -
Tan11g0523 693 FunFam Auxin response factor 133 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0523 Tan-Chr11:4476529 Tan11g2197 Tan-Chr11:59274760 6.20E-115 dispersed
Tan11g0523 Tan-Chr11:4476529 Tan01g1062 Tan-Chr1:10454652 3.50E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28670 PF02309 AUX_IAA 1.90E-11 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0523 K14486 - csv:101206845 1212.59