Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0585 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTCCATAGGCACATTAAACATAACTGGGTTTTCGAGAAAAATTCTCCATCGGTTGCAGTTTCAGAGTTAACCAGTAGTCCTAGGCGGAAATGGCGGATCTTCAGTCGGTCGTCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTGATGGCGGACCCTGTAATTGTCTCCTCTGGTCACACTTTCGAAGCTGCCTGTGTTCGGGTTTGTAAAGATTTAGGGTTGAAGCCGACTTTGTTAGACGGTTCGAAGCCGGATTTCTCCTCTGTAATCCCGAATCTGGCTCTCAAATCCACCATTCTCAATTGGTGTAAAAACTCCTCTTCTGAACCCCCTAAACCCCTCGATTTCTCCTCCGCCGAAAAGCTCGTTCGTAAATTCATGGCGGCCAACAGCAAAAGCGACGAGGAATTGATTCAAGGGATTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACCGAGGTCACTCGTCGGAAATCTCATTTCTACTCGAGCTCCGATGAATCTGTGGCCGCCGTTCCGACTCTGCCCCTTCCTCTCGCGACTCGGCCGAGTTGCTGTTCTTCGTCGTCTTCCTCTGAAATTGAGATCTCTACTCTGAACTCCCCTGAAGAAGAGGAGATCCTCGCGAAGCTTAAAAGCACTCAGGTTATTGAGATTGAAGAGGCTGTGATTACGCTAAGAAAAATCACCAGAATTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTATGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTACAGCGGCGTTCAGGTGAATTCAGTTGCAGCGCTGGTGAATCTGTCTTTGGAGAATTTGAACAAGGTCAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCCGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACCGCAATCGGAGTATTGGGTGCTCTACCGCCATTGATACGGCTGTTGGTATCTGACTCAGAGCAGACTCGACACGACTCGGCTCTTGCTCTGTACCACCTATCCCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGAATGGTGAAAACCGGGCACATGGCCGGCCGGATTTTGCTGATATTGTGTAATATAGCAGCGTGTTTCGACGGTCGTGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGTATGTTGAGAGAGAACGAGTTGGACTCCGAGTCGACTCGGGAGAGTTGCGTGGCGGTTCTGTTTGGACTGAGTTACGGCGGTTTGCGGTTCAAGGGCCTGGCCAAAACCGCTGGAGCAATGGAGGTTTTCATGGCGGTGGAGAAAAACGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTTCATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAAGAATTGCTTGACTCGGGTTGTTTCGGCAGTTCCGGCAGCCGCACTCGGTGTCGACTCGGCGCCGGAATGGACAGGTCCACCGTAAACTCGTCCGAGTTTTGA 1659 50.81 MEFQEGLMKFMVHRHIKHNWVFEKNSPSVAVSELTSSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVRVCKDLGLKPTLLDGSKPDFSSVIPNLALKSTILNWCKNSSSEPPKPLDFSSAEKLVRKFMAANSKSDEELIQGIAENPVVRFNHAATEVTRRKSHFYSSSDESVAAVPTLPLPLATRPSCCSSSSSSEIEISTLNSPEEEEILAKLKSTQVIEIEEAVITLRKITRIREDTRVHLCSPMILSALRSLIVSRYSGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKTGHMAGRILLILCNIAACFDGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEFMKARDEEAEDVNWEELLDSGCFGSSGSRTRCRLGAGMDRSTVNSSEF 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5210158 5211816 + Tan0022427.1 Tan11g0585 767522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0585 552 Gene3D - 231 507 IPR011989 -
Tan11g0585 552 Pfam Armadillo/beta-catenin-like repeat 343 382 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 Pfam Armadillo/beta-catenin-like repeat 305 341 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 354 396 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 FunFam RING-type E3 ubiquitin transferase 230 506 - -
Tan11g0585 552 PANTHER U BOX DOMAIN-CONTAINING 48 507 - -
Tan11g0585 552 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan11g0585 552 SUPERFAMILY ARM repeat 235 487 IPR016024 -
Tan11g0585 552 SMART arm_5 302 342 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 SMART arm_5 343 383 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 SMART arm_5 423 466 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 313 350 IPR000225 GO:0005515(InterPro)
Tan11g0585 552 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan11g0585 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Tan11g0585 552 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan11g0585 552 SUPERFAMILY RING/U-box 56 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0585 Tan-Chr11:5210158 Tan04g0628 Tan-Chr4:5304952 7.30E-10 dispersed
Tan11g0585 Tan-Chr11:5210158 Tan05g2040 Tan-Chr5:70587201 4.60E-81 wgd
Tan11g0585 Tan-Chr11:5210158 Tan09g2201 Tan-Chr9:72023648 1.20E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0585 - - - 0.0