Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0610 ATGATGTCGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACGGCAACATGCTGTTTTTCGGGAGTGGTGATTCCATTCTTCGAGGACCAAGGTTCACGATGGGGATGGAGGAAACTTCAAAGAAGCGACCCTTTTTCAGCTCTCCGGATGACCTATTCGACGACGACTACTACGATGACCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTCGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAACTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCCCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCTAGCTACGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGCATCCTCGTTTCAAGCTAAGAAATCCGATCCAATTTTGGAAGACCAAATCCTTGTTCCTGTTGTGCAACACAGCATGAAGATTGAGGATCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGACGGTCCTCAACTCTTGGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATGATGGCTGTGTTTTCCCAGTTTTTGGAGTGAACTCGGAGGAAGAGGACGGGAGTGACGACGGTCAGGGTTACTTCTCGGACGTTTATACAGCAACCGATCAGCAGACTAACGAGGGAGAACCTCTGACCTGGTGGGACTGGACGTCGTAG 837 49.58 MMSDGLIFNRSPGHGNMLFFGSGDSILRGPRFTMGMEETSKKRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLTEKLQAKEVVASSFQAKKSDPILEDQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVFPVFGVNSEEEDGSDDGQGYFSDVYTATDQQTNEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5408743 5410940 - Tan0006540.1 Tan11g0610 767547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0610 278 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Tan11g0610 278 Coils Coil 140 167 - -
Tan11g0610 278 Gene3D - 58 126 - -
Tan11g0610 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Tan11g0610 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Tan11g0610 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Tan11g0610 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 211 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Tan11g0610 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan11g0610 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Tan11g0610 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
Tan11g0610 278 SUPERFAMILY Homeodomain-like 49 122 IPR009057 -
Tan11g0610 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan11g0610 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0529 Tan-Chr11:4582562 Tan11g0610 Tan-Chr11:5408743 2.60E-20 dispersed
Tan11g0610 Tan-Chr11:5408743 Tan11g1807 Tan-Chr11:20164424 1.50E-08 dispersed
Tan11g0610 Tan-Chr11:5408743 Tan07g1342 Tan-Chr7:62977400 8.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28674 PF00046 Homeodomain 3.40E-17 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0610 K09338 - csv:101210106 484.182