Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0615 ATGGATAATCATTCACTTGAGACTTCGAGGCATAAATGTGCAGCTTGCTTTAGGCAATTCAACAAGATAGAGCACTTGGTTGATCATATGAGGACCTCTTTTCACTCAGTTCATGAACCCACTTGTAACATTTGCAAGAAACACTGTAGATCTCTTGATTCTCTTAGAGAACATCTTATTGGGCCACTCCCAAAGCAAGAATGCAAAAACATTTTTGCGACAAGAGGATGCAAGTTTTGTTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTTCATCAAGAAAGATGCCAATTCTCTGGTGTAAATTCTGGGCTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGATGGTTCGACCATCGTCGACAAGGGAAGAACTCGAGGCTCCGGCGCGGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGCGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTATGAAACGACGGGTATTCGTCCAGAACAGTTTAGGGAGGCAATGATGCTGAAACAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTAGAAGACGATCTCAAACGCCTACAAATTGGATATCCATCCGTCGCGATAAGATTTGAGATTCAAAAAGGGATACAAGATCCTTATGAAGATTGTGTTGCAGCCATGAGAGTATACAAAAGAATGAGATCAGAAGTTCATAGGATAGAGAACCATCCAATGGCTTCAGATCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTCAGAGAATGAGCCCAGAACAGATGTTGGACATTTCAAGGTCTGATTATTATTGTTGGTGCATCGACTCCATGATTTGA 957 42.32 MDNHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPTCNICKKHCRSLDSLREHLIGPLPKQECKNIFATRGCKFCLAILDSSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTIVDKGRTRGSGAVALACKYVGGGGDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETTGIRPEQFREAMMLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSVAIRFEIQKGIQDPYEDCVAAMRVYKRMRSEVHRIENHPMASDPQNKNNFAVWRENELQRMSPEQMLDISRSDYYCWCIDSMI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5445849 5449225 - Tan0007759.1 Tan11g0615 767552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0615 318 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 241 316 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Tan11g0615 318 Gene3D Classic Zinc Finger 1 61 - -
Tan11g0615 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 40 IPR013087 -
Tan11g0615 318 SMART exoiiiendus 131 269 IPR013520 -
Tan11g0615 318 SUPERFAMILY Ribonuclease H-like 149 270 IPR012337 -
Tan11g0615 318 ProSitePatterns Zinc finger C2H2 type domain signature. 13 35 IPR013087 -
Tan11g0615 318 Gene3D - 129 242 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g2343 Tan-Chr7:74709413 Tan11g0615 Tan-Chr11:5445849 6.70E-65 dispersed
Tan07g2344 Tan-Chr7:74709413 Tan11g0615 Tan-Chr11:5445849 5.10E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28675 PF00929 RNase_T 0.00026 CL0219 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0615 - - - 0.0