Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g0615 | ATGGATAATCATTCACTTGAGACTTCGAGGCATAAATGTGCAGCTTGCTTTAGGCAATTCAACAAGATAGAGCACTTGGTTGATCATATGAGGACCTCTTTTCACTCAGTTCATGAACCCACTTGTAACATTTGCAAGAAACACTGTAGATCTCTTGATTCTCTTAGAGAACATCTTATTGGGCCACTCCCAAAGCAAGAATGCAAAAACATTTTTGCGACAAGAGGATGCAAGTTTTGTTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTTCATCAAGAAAGATGCCAATTCTCTGGTGTAAATTCTGGGCTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGATGGTTCGACCATCGTCGACAAGGGAAGAACTCGAGGCTCCGGCGCGGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGCGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTATGAAACGACGGGTATTCGTCCAGAACAGTTTAGGGAGGCAATGATGCTGAAACAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTAGAAGACGATCTCAAACGCCTACAAATTGGATATCCATCCGTCGCGATAAGATTTGAGATTCAAAAAGGGATACAAGATCCTTATGAAGATTGTGTTGCAGCCATGAGAGTATACAAAAGAATGAGATCAGAAGTTCATAGGATAGAGAACCATCCAATGGCTTCAGATCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTCAGAGAATGAGCCCAGAACAGATGTTGGACATTTCAAGGTCTGATTATTATTGTTGGTGCATCGACTCCATGATTTGA | 957 | 42.32 | MDNHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPTCNICKKHCRSLDSLREHLIGPLPKQECKNIFATRGCKFCLAILDSSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTIVDKGRTRGSGAVALACKYVGGGGDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETTGIRPEQFREAMMLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSVAIRFEIQKGIQDPYEDCVAAMRVYKRMRSEVHRIENHPMASDPQNKNNFAVWRENELQRMSPEQMLDISRSDYYCWCIDSMI | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5445849 | 5449225 | - | Tan0007759.1 | Tan11g0615 | 767552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g0615 | 318 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 241 | 316 | IPR047021 | GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER) | |
Tan11g0615 | 318 | Gene3D | Classic Zinc Finger | 1 | 61 | - | - | |
Tan11g0615 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 40 | IPR013087 | - | |
Tan11g0615 | 318 | SMART | exoiiiendus | 131 | 269 | IPR013520 | - | |
Tan11g0615 | 318 | SUPERFAMILY | Ribonuclease H-like | 149 | 270 | IPR012337 | - | |
Tan11g0615 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 35 | IPR013087 | - | |
Tan11g0615 | 318 | Gene3D | - | 129 | 242 | IPR036397 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan07g2343 | Tan-Chr7:74709413 | Tan11g0615 | Tan-Chr11:5445849 | 6.70E-65 | dispersed | |
Tan07g2344 | Tan-Chr7:74709413 | Tan11g0615 | Tan-Chr11:5445849 | 5.10E-65 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28675 | PF00929 | RNase_T | 0.00026 | CL0219 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g0615 | - | - | - | 0.0 |