Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0653 ATGGCTTCTTCAAGCTACTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCAGACTGCATATTTGCTCCCTACTTTCCACCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTCGGAGCCAGCAATGTTAGCAAGCTCCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTCAATTCGCTAGCCTACGAGGCCGAGGCTCGCATGAAAGACCCCGTCTATGGCTGCGTCGGGGCCATCTCCGTTCTGCAGCGACAAGTCCTTCGATTACAGAAGGAGCTCGACGCTACAAATGCTGATTTGGTACGATATGCCAGCGGGAGCGGGCGCCCGCTCTCGCAATTTGGAAGGAGGGCAGCAGGAGCCTCGACCGCGGCTCGGCATCATTCTGATGTGTGTTTTGTTTCTCCCTTGAATAGTAATGATCATAATCATGATCCTTATTGCCATGATAAAGATCAGGAAGGGAATTGA 501 50.9 MASSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLVRYASGSGRPLSQFGRRAAGASTAARHHSDVCFVSPLNSNDHNHDPYCHDKDQEGN 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5740323 5740823 - Tan0010697.1 Tan11g0653 767590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0653 166 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Tan11g0653 166 Coils Coil 89 109 - -
Tan11g0653 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 115 - -
Tan11g0653 166 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2289 Tan-Chr9:72856130 Tan11g0653 Tan-Chr11:5740323 9.20E-53 dispersed
Tan10g1658 Tan-Chr10:34729835 Tan11g0653 Tan-Chr11:5740323 5.50E-26 dispersed
Tan11g0292 Tan-Chr11:2308414 Tan11g0653 Tan-Chr11:5740323 7.40E-36 dispersed
Tan11g0319 Tan-Chr11:2505729 Tan11g0653 Tan-Chr11:5740323 3.30E-33 dispersed
Tan11g0653 Tan-Chr11:5740323 Tan11g0811 Tan-Chr11:6780495 2.10E-29 dispersed
Tan11g0653 Tan-Chr11:5740323 Tan05g1980 Tan-Chr5:69437201 1.00E-44 wgd
Tan11g0653 Tan-Chr11:5740323 Tan07g1392 Tan-Chr7:64748048 7.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28678 PF03195 LOB 9.80E-42 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0653 - - - 0.0