Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0685 ATGGCGGCTTGTCTTTGCTTTTTGCTTCTTTTAGCACTCTCTGCTTCAACTTGTGCTTCCTCATTGGCTTCCGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATCAATGAATCAAGATCAAGAAGAAACTTGGGATATTTGTCGTGCGGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACGAACCGAAAGCGGTTAGCCGACTGCGCAATCGGGTTCGGCAAGAACGCCATCGGCGGTAGAAACGGGAGGTTCTACGTGGTGAGCGACGACGGCGACGACGACCCCGTCAGCCCACGCCCGGGGACCCTCCGGCACGCGGTGATCCAAAACGAGCCGTTATGGATCGTATTCAAGCGGGACATGGTGATACAGCTGAGGCAAGAACTGGTGATGAACTCGTTCAAGACAATAGACGGGCGTGGGGCCAGCGTACACGTGGCAGGTGGGCCATGCATAAAGATCCACTACGCGACAAACATAATAATCCACGGGGTCCATATACACGACTGCAAGAGAGGGGGAAATGGTAACATACGGGACTCCCCACAGCACTCAGGGTGGTGGACGGAATCGGACGGTGACGGAGTGTCGATCTTCGGTGGGAGGAATATTTGGGTTGACCATTGTTCTTTGTCGAATTGTAATGATGGGTTGATTGATGCGATTCATGGCTCGACCGCGATTACCATTTCGAATAATTATATGACGCATCATGATAAGGTGATGCTTTTGGGACATAGTGATTCTTACACTCAAGATAAGAATATGCAGGTTACTATTGCTTTCAACCATTTTGGTGAAGCCCTTGTCCAACGAATGCCAAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGATTACACCCATTGGGAAATGTACGCAATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGCAACAGATTTCTGGCGCCGGACACCCGGTTTCGAAAAGAGGTGACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGGTCGGAGGGCGATATGATGTTGAACGGTGCCTATTTCCGCCAGTCCGGCGCCGGCGCCGCCTCCAGCTACGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCCCTCGTCGGCTCTATCACCGTCACCGCCGGCGCCCTAAACTGCCGTAAAGGCTCCCGCTGCTAG 1218 52.96 MAACLCFLLLLALSASTCASSLASVQDPHLVVQEVQRSINESRSRRNLGYLSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVSDDGDDDPVSPRPGTLRHAVIQNEPLWIVFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCIKIHYATNIIIHGVHIHDCKRGGNGNIRDSPQHSGWWTESDGDGVSIFGGRNIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEALVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDTRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5943029 5946511 + Tan0022706.1 Tan11g0685 767622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0685 405 Gene3D - 56 398 IPR012334 -
Tan11g0685 405 Pfam Pectate lyase 137 322 IPR002022 -
Tan11g0685 405 SMART amb_all 131 328 IPR002022 -
Tan11g0685 405 FunFam Pectate lyase 56 398 - -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Tan11g0685 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Tan11g0685 405 PANTHER PECTATE LYASE 18-RELATED 17 402 IPR045032 GO:0030570(InterPro)
Tan11g0685 405 SUPERFAMILY Pectin lyase-like 29 400 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2286 Tan-Chr3:77054655 Tan11g0685 Tan-Chr11:5943029 3.70E-122 dispersed
Tan05g2885 Tan-Chr5:81256955 Tan11g0685 Tan-Chr11:5943029 1.10E-188 dispersed
Tan05g2886 Tan-Chr5:81256955 Tan11g0685 Tan-Chr11:5943029 2.80E-161 dispersed
Tan10g0579 Tan-Chr10:4745473 Tan11g0685 Tan-Chr11:5943029 8.40E-166 dispersed
Tan10g0580 Tan-Chr10:4745473 Tan11g0685 Tan-Chr11:5943029 1.80E-161 dispersed
Tan11g0685 Tan-Chr11:5943029 Tan11g0926 Tan-Chr11:7527333 8.50E-141 dispersed
Tan11g0685 Tan-Chr11:5943029 Tan07g2128 Tan-Chr7:72582443 1.30E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0685 K01728 - csv:101217834 729.169