Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0716 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTCGGCCGTCCTCGTCACACCGGTGTGATGGTCGGAATGGGCCAGAAAGATGCTTATGTTGGTGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATAGAGCATGGTATTGTAAGCAACTGGGATGACATGGAAAAAATTTGGCATCACACGTTCTATAATGAACTTCGTGTTGCCCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGTCGAACAACTGGAATTGTGATGGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATTTATGAGGGTTATGCTCTCCCACATGCCATTCTTCGACTTGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAGGAACTTGAAACATCTAAGACAAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGGCAAGTCATCACAATTGGAGCCGAGCGTTTCAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATCGGGATGGAAGCTGCAGGCATTCATGAAACCACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATTGTCCTCTCTGGTGGTTCGACCATGTTTTCGGGCATTGCTGATAGAATGAGTAAGGAAATCTCTGCATTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAATACAGTGTCTGGATTGGTGGTTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 46.91 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6154362 6157092 - Tan0004373.1 Tan11g0716 767653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0716 377 Gene3D - 10 371 - -
Tan11g0716 377 Gene3D - 140 340 - -
Tan11g0716 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Tan11g0716 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tan11g0716 377 SMART actin_3 7 377 IPR004000 -
Tan11g0716 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tan11g0716 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Tan11g0716 377 Pfam Actin 5 377 IPR004000 -
Tan11g0716 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Tan11g0716 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tan11g0716 377 FunFam Actin, muscle 182 273 - -
Tan11g0716 377 PRINTS Actin signature 51 62 IPR004000 -
Tan11g0716 377 PRINTS Actin signature 238 254 IPR004000 -
Tan11g0716 377 PRINTS Actin signature 63 85 IPR004000 -
Tan11g0716 377 PRINTS Actin signature 28 37 IPR004000 -
Tan11g0716 377 PRINTS Actin signature 117 130 IPR004000 -
Tan11g0716 377 PRINTS Actin signature 142 161 IPR004000 -
Tan11g0716 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Tan11g0716 377 FunFam Actin, alpha skeletal muscle 3 179 - -
Tan11g0716 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Tan11g0716 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Tan11g0716 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1503 Tan-Chr8:62355528 Tan11g0716 Tan-Chr11:6154362 2.20E-215 dispersed
Tan09g1930 Tan-Chr9:70295085 Tan11g0716 Tan-Chr11:6154362 8.40E-73 dispersed
Tan11g0124 Tan-Chr11:1255474 Tan11g0716 Tan-Chr11:6154362 2.70E-86 dispersed
Tan11g0125 Tan-Chr11:1255474 Tan11g0716 Tan-Chr11:6154362 3.70E-88 dispersed
Tan11g0716 Tan-Chr11:6154362 Tan11g0718 Tan-Chr11:6154362 7.30E-219 dispersed
Tan11g0716 Tan-Chr11:6154362 Tan11g0717 Tan-Chr11:6154362 7.30E-219 tandem
Tan04g0301 Tan-Chr4:2452256 Tan11g0716 Tan-Chr11:6154362 3.00E-217 transposed
Tan11g0716 Tan-Chr11:6154362 Tan03g0957 Tan-Chr3:66011105 1.40E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0716 K10355 - csv:101220611 744.962