Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0734 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGGAACTGCCTGTGAGACTAATAATACTCAACACCTTCCGCCACCACCACCGCCAGCTGCAGCTGGTGGTGCTGGAGGCGGAGGAGGAGGGCCTGGGTCGATTAGACCTGGATCAATGACGGATCGAGCCAGACAGGCTAAGATACCGCAACCGGAAGCCGGGTTAAAATGCCCGAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAGCCACGACACTTTTGCAAGACCTGCCGACGGTACTGGACGAGAGGCGGGGCGATGAGGAACGTGCCGGTCGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAGCAAAGGAGGGAGCAACCGGTCAAAATCTCCGGCGGGTTCAAGTACTTCAACAAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCACCAATTGGGTCCTCCTCCACCAACTCATTTACCCTTTTTGGCAGCTCCAAATTTACACCATCTGAGTGATTTTGGAAACATTGGTTTAAACTTTGAAGGCCTTCAAATCCCAAATTCACTCCCATCATCAGCAGGAGAATCATCCATTTTATCAAGTGGAATTATTGATCATCACCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATAGCTGAAGATCATCATCATCATCATCATCAACAACAACAACCAGCTGATTTCTCAAATTACCAACGCTTGTCAAAGCCATTATTGGACAGTGGATTTAGTACTACAACTCATCAGTTGGGGAACACTAATAGTAGCATGAAAATCGTGGAGGACACACAAGGAATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAACTACAACAACAACAACAGCTGGGAATATTGCATGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1056 44.79 MVFSSVPVFLDPPNWPSQQPNQLQGTACETNNTQHLPPPPPPAAAGGAGGGGGGPGSIRPGSMTDRARQAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHLPFLAAPNLHHLSDFGNIGLNFEGLQIPNSLPSSAGESSILSSGIIDHHQWKIPFFANLHQQNGMYSNFIAEDHHHHHHQQQQPADFSNYQRLSKPLLDSGFSTTTHQLGNTNSSMKIVEDTQGINNLSRNFLGIQPNDQFWNSTTTTTTAGNIAWTDQISDHFNSTSSTSHLL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6262569 6264534 - Tan0005570.1 Tan11g0734 767671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0734 351 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan11g0734 351 MobiDBLite consensus disorder prediction 1 79 - -
Tan11g0734 351 MobiDBLite consensus disorder prediction 138 169 - -
Tan11g0734 351 Pfam Dof domain, zinc finger 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan11g0734 351 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan11g0734 351 MobiDBLite consensus disorder prediction 120 169 - -
Tan11g0734 351 MobiDBLite consensus disorder prediction 11 33 - -
Tan11g0734 351 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 66 254 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0734 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0300 Tan-Chr4:2442933 Tan11g0734 Tan-Chr11:6262569 2.60E-44 dispersed
Tan05g0376 Tan-Chr5:2744196 Tan11g0734 Tan-Chr11:6262569 4.40E-42 dispersed
Tan08g1993 Tan-Chr8:72042638 Tan11g0734 Tan-Chr11:6262569 1.40E-48 dispersed
Tan10g1676 Tan-Chr10:37944187 Tan11g0734 Tan-Chr11:6262569 1.50E-22 dispersed
Tan11g0734 Tan-Chr11:6262569 Tan11g1178 Tan-Chr11:9728980 2.80E-23 dispersed
Tan11g0734 Tan-Chr11:6262569 Tan03g0966 Tan-Chr3:66106338 3.80E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT1G29160 54.4 3.7e-40 162.2
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT1G29160 52.6 6.3e-40 161.4
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-40 163.7
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-36 150.6
Tan11g0734 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.2e-38 157.1
Tan09g2117 . 33 384 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.9e-88 323.9
Tan01g2463 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.4e-39 161.4
Tan03g0966 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0967 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0966 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan03g0967 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan09g2004 . 24 317 C2C2-Dof Transcription Factor Family AT5G60850 52.8 2.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28681 PF02701 zf-Dof 4.40E-31 No_clan Tan TF