Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0811 ATGTCCCCGCCGCCGCCGCCGACGACGGTGGTTCTCAGCCCGTGCGCCGCTTGTAAGATCCTCCGCCGGAGATGCGTCAATAAGTGTGTTTTGGCGCCTTATTTTCCTCCCACTGAGCCACTCAAGTTCGCCGCCGTGCATCGAATATTTGGAGCCGGCAACGTCATCAAGTTCTTGCAGGACCTTCCTGAGAATCATAGAGTAGATGCTGCGAGCAGTTTGGTATACGAAGCAAGCGCTAGGATTCGAGACCCAATCTATGGTTGCACAGGAGCAATTTTTCAACTTCAAAATCAAGTGAGTGAGCTCCATGCACAATTGGCTATGGCAAAAGCTGAGATTCATAAGATGCAACTTCAACAAGCAAATTTGTTAACCCTAATTTGCACGGAAACAAGTCAACTTCAAGACCAAGAGGATTCCATCTTGAGCCAACAACACTTTCCGTTTACTGATTTTAGCCCTCTTCCATATAACAAATTTTCTGACATTTGA 495 47.27 MSPPPPPTTVVLSPCAACKILRRRCVNKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQDLPENHRVDAASSLVYEASARIRDPIYGCTGAIFQLQNQVSELHAQLAMAKAEIHKMQLQQANLLTLICTETSQLQDQEDSILSQQHFPFTDFSPLPYNKFSDI 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6780495 6781802 - Tan0013536.1 Tan11g0811 767748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0811 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 136 - -
Tan11g0811 164 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Tan11g0811 164 Coils Coil 93 120 - -
Tan11g0811 164 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0396 Tan-Chr4:3287048 Tan11g0811 Tan-Chr11:6780495 6.10E-42 dispersed
Tan05g0284 Tan-Chr5:2133005 Tan11g0811 Tan-Chr11:6780495 5.10E-43 dispersed
Tan11g0653 Tan-Chr11:5740323 Tan11g0811 Tan-Chr11:6780495 2.10E-29 dispersed
Tan11g0811 Tan-Chr11:6780495 Tan01g2596 Tan-Chr1:39333484 7.40E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28684 PF03195 LOB 3.40E-40 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0811 - - - 0.0