Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g0811 | ATGTCCCCGCCGCCGCCGCCGACGACGGTGGTTCTCAGCCCGTGCGCCGCTTGTAAGATCCTCCGCCGGAGATGCGTCAATAAGTGTGTTTTGGCGCCTTATTTTCCTCCCACTGAGCCACTCAAGTTCGCCGCCGTGCATCGAATATTTGGAGCCGGCAACGTCATCAAGTTCTTGCAGGACCTTCCTGAGAATCATAGAGTAGATGCTGCGAGCAGTTTGGTATACGAAGCAAGCGCTAGGATTCGAGACCCAATCTATGGTTGCACAGGAGCAATTTTTCAACTTCAAAATCAAGTGAGTGAGCTCCATGCACAATTGGCTATGGCAAAAGCTGAGATTCATAAGATGCAACTTCAACAAGCAAATTTGTTAACCCTAATTTGCACGGAAACAAGTCAACTTCAAGACCAAGAGGATTCCATCTTGAGCCAACAACACTTTCCGTTTACTGATTTTAGCCCTCTTCCATATAACAAATTTTCTGACATTTGA | 495 | 47.27 | MSPPPPPTTVVLSPCAACKILRRRCVNKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQDLPENHRVDAASSLVYEASARIRDPIYGCTGAIFQLQNQVSELHAQLAMAKAEIHKMQLQQANLLTLICTETSQLQDQEDSILSQQHFPFTDFSPLPYNKFSDI | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6780495 | 6781802 | - | Tan0013536.1 | Tan11g0811 | 767748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g0811 | 164 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 13 | 136 | - | - | |
Tan11g0811 | 164 | Pfam | Lateral organ boundaries (LOB) domain | 14 | 111 | IPR004883 | - | |
Tan11g0811 | 164 | Coils | Coil | 93 | 120 | - | - | |
Tan11g0811 | 164 | ProSiteProfiles | LOB domain profile. | 13 | 114 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0396 | Tan-Chr4:3287048 | Tan11g0811 | Tan-Chr11:6780495 | 6.10E-42 | dispersed | |
Tan05g0284 | Tan-Chr5:2133005 | Tan11g0811 | Tan-Chr11:6780495 | 5.10E-43 | dispersed | |
Tan11g0653 | Tan-Chr11:5740323 | Tan11g0811 | Tan-Chr11:6780495 | 2.10E-29 | dispersed | |
Tan11g0811 | Tan-Chr11:6780495 | Tan01g2596 | Tan-Chr1:39333484 | 7.40E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28684 | PF03195 | LOB | 3.40E-40 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g0811 | - | - | - | 0.0 |