Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0812 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAACCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTCCATTGGATGTCTCTGTTCTACCTATTGAAGAAGTGAAACTAGCTGATGCAGAGAATGAACAGAGCAAGCATGCTTACTCTGTTGCCATTGCCACTGCAGTGGCCGCCGAGGCGGCCGTTGCAGCGGCTCAGGCTGCGGCAGAGGTCGTTCGGCTCACCACCATCCCTCGATACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCTAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATACATGGTCAATCTGTTAAAAGACAGGCAACAACCACATTAAGATGCATGCAGACACTTGCTCGAGTGCAATCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAACCAGGCTCTTCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGGATGATAGTACTAAATCAAAGGAGCAAGTAGAAGCCAGATTAGTTAATAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCTTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCACTGGGGCTGGAGTTGGTTAGAGCGATGGATGGCCGCTCGTCCATGGGAGACCAAAAGCACCGTCGATTACCACGATCGTGGCTCTGTCAAGAGCGCAATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACCCCGACAAGCCAAAAAACGAGCCGTGCACCGAGTCGCCAATCACCGGCGACTCCTACGAAGGCGCAATCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGCGAGTCCAAGAGGATTCGGCTGGGGAGGAGACGACGATTCCAGAAGCGGATTGAGCGTCAAATCGGAGCGGTACCGGCGACATAGCATCGCCGGATCATCGGTAAGGGACGACGAAAGCTTCACAAGTACGCCTTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGGCTATCGAGTCCGATTGGAACAGAGAAGACGACAGCGACTCCGGAGAAAGGACCGGCAAGTGGCGGCGCAAAGAAGCGGCTCTCGTTCCCCGCCTCGCCGGCGACAGCGAGAAGACACTCTGGTCCGCCTAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAAAGAGATTTTACCGGCGAGAGCAGATAG 1458 51.37 MGKRGGWFSAVKKAFAPESKEKKDQKTNKPKKRWFGKPKKLETVASAEPAPLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIHGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAQSSLSAGRKLKPASPRGFGWGGDDDSRSGLSVKSERYRRHSIAGSSVRDDESFTSTPSVPSYMASTEAARARSRLSSPIGTEKTTATPEKGPASGGAKKRLSFPASPATARRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6799965 6803562 - Tan0016753.1 Tan11g0812 767749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0812 485 MobiDBLite consensus disorder prediction 395 411 - -
Tan11g0812 485 Coils Coil 177 197 - -
Tan11g0812 485 Pfam Protein of unknown function (DUF4005) 387 457 IPR025064 -
Tan11g0812 485 MobiDBLite consensus disorder prediction 13 38 - -
Tan11g0812 485 MobiDBLite consensus disorder prediction 376 394 - -
Tan11g0812 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Tan11g0812 485 ProSiteProfiles IQ motif profile. 114 142 - -
Tan11g0812 485 MobiDBLite consensus disorder prediction 319 485 - -
Tan11g0812 485 PANTHER IQ-DOMAIN 5-RELATED 6 438 - -
Tan11g0812 485 MobiDBLite consensus disorder prediction 324 356 - -
Tan11g0812 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0812 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0090 Tan-Chr1:970592 Tan11g0812 Tan-Chr11:6799965 1.50E-21 dispersed
Tan01g4612 Tan-Chr1:112130964 Tan11g0812 Tan-Chr11:6799965 2.50E-29 dispersed
Tan03g1041 Tan-Chr3:66706645 Tan11g0812 Tan-Chr11:6799965 1.60E-104 dispersed
Tan04g0574 Tan-Chr4:4837800 Tan11g0812 Tan-Chr11:6799965 4.40E-101 dispersed
Tan04g0575 Tan-Chr4:4837800 Tan11g0812 Tan-Chr11:6799965 8.20E-113 dispersed
Tan07g0486 Tan-Chr7:8655859 Tan11g0812 Tan-Chr11:6799965 3.20E-17 dispersed
Tan08g1905 Tan-Chr8:71408315 Tan11g0812 Tan-Chr11:6799965 4.70E-73 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan11g0812 Tan-Chr11:6799965 6.40E-33 dispersed
Tan10g0024 Tan-Chr10:570467 Tan11g0812 Tan-Chr11:6799965 2.60E-38 dispersed
Tan10g0025 Tan-Chr10:570467 Tan11g0812 Tan-Chr11:6799965 4.00E-35 dispersed
Tan10g0796 Tan-Chr10:6628723 Tan11g0812 Tan-Chr11:6799965 1.00E-14 dispersed
Tan10g1434 Tan-Chr10:19448017 Tan11g0812 Tan-Chr11:6799965 2.80E-22 dispersed
Tan10g1435 Tan-Chr10:19448017 Tan11g0812 Tan-Chr11:6799965 2.80E-22 dispersed
Tan11g0812 Tan-Chr11:6799965 Tan11g1579 Tan-Chr11:14727614 7.60E-27 dispersed
Tan02g0410 Tan-Chr2:3532916 Tan11g0812 Tan-Chr11:6799965 8.20E-17 transposed
Tan03g2549 Tan-Chr3:78698596 Tan11g0812 Tan-Chr11:6799965 2.00E-33 transposed
Tan06g1528 Tan-Chr6:22056702 Tan11g0812 Tan-Chr11:6799965 5.80E-25 transposed
Tan10g1631 Tan-Chr10:30711236 Tan11g0812 Tan-Chr11:6799965 2.90E-20 transposed
Tan11g0812 Tan-Chr11:6799965 Tan04g0573 Tan-Chr4:4837800 3.30E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40