Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0853 ATGACGAAGAATGCGGCGGAGCGCGGCTCGTTCTCGACGAAGGACTACCACGATCCGCCACCGGCGCCGCTCATCGACGCCGTGGAGATTACGAAGTGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCCACTCTGCTTTTCCTGTACGTCACTGTGTTGACGGTGATCGGCTACAAATCGCAGACGGATCATATCGGCAACAAGAATGTCGATCCTTGTGGTGGCGTTGGGATTCTCGGCATTGCATGGGCGTTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCAGTGACATTTGGGCTGCTTTTGGCCCGTAAGGTGTCACTGGTACGGGCCGTGATGTACATGGTGGCCCAATGCTTAGGGGCCATTAGCGGAGTTGGGCTCGTGAAGGCCTTCCAGAAGGCCCACTTCCAGAAATACGGCGGTGGGGCCAATGGGCTCGCCGACGGCTACACCGTCGGCGTCGGACTGGCGGCGGAGATCGTGGGAACGTTTGTGTTGGTGTACACAGTCTTCTCTGCAACTGATCCCAAACGAAACGCCAGAGATTCCCATGTTCCTGTTTTGGCTCCACTTCCAATTGGATTTGCAGTGTTCATGGTTCACTTGGCTACTATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGCTATTTTCAATGAGCAAAAGACTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCTGCAATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGGTCATTTAGAAGCAACCCAAATGTGTGA 864 52.08 MTKNAAERGSFSTKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAAIFNEQKTWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7002074 7007295 - Tan0017407.1 Tan11g0853 767790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0853 287 FunFam Probable aquaporin PIP1-2 22 285 - -
Tan11g0853 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan11g0853 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Tan11g0853 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 NCBIfam MIP family channel protein 41 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g0853 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Tan11g0853 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Tan11g0853 287 CDD MIP 37 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1062 Tan-Chr3:66863529 Tan11g0853 Tan-Chr11:7002074 4.00E-129 dispersed
Tan03g1063 Tan-Chr3:66869326 Tan11g0853 Tan-Chr11:7002074 1.10E-120 dispersed
Tan04g0597 Tan-Chr4:5061882 Tan11g0853 Tan-Chr11:7002074 4.50E-108 dispersed
Tan05g0256 Tan-Chr5:1952043 Tan11g0853 Tan-Chr11:7002074 1.40E-121 dispersed
Tan05g1123 Tan-Chr5:10082063 Tan11g0853 Tan-Chr11:7002074 1.50E-108 dispersed
Tan07g1628 Tan-Chr7:67736079 Tan11g0853 Tan-Chr11:7002074 2.60E-104 dispersed
Tan08g1884 Tan-Chr8:71178168 Tan11g0853 Tan-Chr11:7002074 4.70E-117 dispersed
Tan11g0768 Tan-Chr11:6481157 Tan11g0853 Tan-Chr11:7002074 7.40E-26 dispersed
Tan01g4556 Tan-Chr1:111392020 Tan11g0853 Tan-Chr11:7002074 2.00E-30 transposed
Tan08g1534 Tan-Chr8:63537060 Tan11g0853 Tan-Chr11:7002074 1.20E-30 transposed
Tan11g0853 Tan-Chr11:7002074 Tan03g1055 Tan-Chr3:66822569 9.10E-113 wgd
Tan11g0853 Tan-Chr11:7002074 Tan04g0596 Tan-Chr4:5061882 4.10E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0853 K09872 - csv:101205700 497.664