Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0873 ATGGGATCCGACAAGGAAAATGGCAGCGTTGGAAGGGCGGAGCCGGGCGCCTTTTGCGGCGGCGTGGCGACGTATTGGAACGGCGCGGCGGAGGGGCTGAAGGGGAGCCATTGGGAAGAGTTCAAACGCATGGTGGAGGAATTTCGACGGCCGGTGGTCCGACTCGGCGGCGAGAGCCTGACGATAGCGCAAGTGGCTGGCATTGCGGCGGCGCGTGGAAGTGAAGTTGCAGTGGAGCTCTGTGAGACGGCTCGGCCGGCGGTGGAGGCGAGTAGTAAATGGGTTGTGGAGAGCATGAGTAATGGAACTGATAGTTATGGAATTACGACTGGCTTTGGTTCCACCTCGCATCGGAGGACCGATCAAGGTGAAGACCTTCAAAAAGAACTCATTAGATTCTTAAACGCAGGAATTTTTGGGAAAGATTCAAATTCTTGCCACACATTACCACAACCCGCGACAAGAGCCGCCATGGTTGTGAGGATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAGCCAAATTCCTCAACCACAACATTACCCCATGTCTCCCTCTTAGAGGAACCATCACAGCTTCTGGTGACCTAGTTCCACTTTCATATATTGTTGGGCTTTTGACTGGCAGGCCCAACTCCAAGGCCATTGGGCCCAATGGTGAATCTCTTAGCCCAATTCAAGCCTTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCCATTTGAAACCTAAGGAAGGTCTTGCACTTGTCAATGGCACTGCAGTTGGTTCTGGCTTGGCTTCCATTGTTCTTTTTGAGGCCAATTATCTTGCTATCCTCTCTGAGATCCTATCAGCAGTTTTTGTTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCCTATGTTAAAACTGCTAGAAAATTGCATGAAATTGACCCACTTCATAAGCCTAAACAAGATCGATATGCTCTTAGAACCTCCCCCCAATGGCTTGGCCCTCAAATTGAAGTCATTCGACACTCCACCAAGATGATTGAGCGTGAGATTAACTCTGTCAATGATAACCCATTGATTGATGTGTTGAGAAACAAGGCTTTACATGGAGGGAACTTCCAAGGTACTCCCATTGGTGTCTCAATGGATAATACTCGTTTAGCAATTGCTTCTATTGGCAAACTCATGTTTGCACAGTTCTCAGAGCTTGTCAATGACTTTTACAACAATGGATTGCCTTCAAATCTCTTTGCTAGTAGAAATCCAAGCTTGGATTATGGGTTCAAAGGTGCAGAGATTGCGATGGCTTCGTATTGCTCTGAGCTTCAATACTTGGCAAACCCAGTAACCAATCATGTTCAAAGCGCTGAGCAACACAACCAAGACGTCAACTCATTGGGGTTGATATCGTCGAGAAAAACAGCTGAGGCGGTTGAGATATTGAAACTTATGTCCACTACTTACTTGGTGGCATTGTGCCAAGCTATTGATTTAAGACACATGGAGAAGAATTTGAAGAAAACAGTGAAGAACACTGTCAGCCAAGTGGCAAAGAAGATCCTTGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGATATAGTGAAAAGGACTTGCTTCAAGCTGTGGATCGAGAACAAGTTTTTGCCTACATTGACGATCCTTGCAGTGATTCATATCCATTGATGCAAAAGCTTAGACAAGTGTTGGTGGATCATGCCCTCAAAAATGGTGAAAAAGAAAGCAACCCAAGTGCTTCAATCTTTCAAAAGATCACAGCTTTTGAAGAGGAATTAAAAGCACTTTTGCCCAAAGAAGTGGAAAATGCAAGAATAGGAGTAGAGAATGGGAGCCCTGTGATTGAAAATCAAATTAAAGAATGTCGATCGTATCCATTGTACAAGTTCGTCAGAGAAACGTTGGGAACTCGGTTGTTGACCGGTGAGAACGACGTATCACCGGGAGAAGAATTCGATAAGGTTTTTTCGACCATTAGTGCTGGAAAATTGATAGATCCAATGCTTGAATGTTTACAAGATTGGATTTGTGCTCCACTTCCTCTTCATTAG 2145 44.9 MGSDKENGSVGRAEPGAFCGGVATYWNGAAEGLKGSHWEEFKRMVEEFRRPVVRLGGESLTIAQVAGIAAARGSEVAVELCETARPAVEASSKWVVESMSNGTDSYGITTGFGSTSHRRTDQGEDLQKELIRFLNAGIFGKDSNSCHTLPQPATRAAMVVRINTLLQGYSGIRFEILEAIAKFLNHNITPCLPLRGTITASGDLVPLSYIVGLLTGRPNSKAIGPNGESLSPIQAFHLAGISGGFFHLKPKEGLALVNGTAVGSGLASIVLFEANYLAILSEILSAVFVEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKTARKLHEIDPLHKPKQDRYALRTSPQWLGPQIEVIRHSTKMIEREINSVNDNPLIDVLRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLFASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSTTYLVALCQAIDLRHMEKNLKKTVKNTVSQVAKKILVLHFNGNLHPIRYSEKDLLQAVDREQVFAYIDDPCSDSYPLMQKLRQVLVDHALKNGEKESNPSASIFQKITAFEEELKALLPKEVENARIGVENGSPVIENQIKECRSYPLYKFVRETLGTRLLTGENDVSPGEEFDKVFSTISAGKLIDPMLECLQDWICAPLPLH 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7147840 7152681 + Tan0021317.1 Tan11g0873 767810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0873 714 FunFam Phenylalanine ammonia-lyase 261 542 - -
Tan11g0873 714 PANTHER HISTIDINE AMMONIA-LYASE 24 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan11g0873 714 Pfam Aromatic amino acid lyase 60 541 IPR001106 -
Tan11g0873 714 Gene3D Fumarase/aspartase (Central domain) 261 707 - -
Tan11g0873 714 FunFam Phenylalanine ammonia-lyase 19 260 - -
Tan11g0873 714 SUPERFAMILY L-aspartase-like 25 713 IPR008948 GO:0003824(InterPro)
Tan11g0873 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Tan11g0873 714 Gene3D - 527 648 IPR023144 -
Tan11g0873 714 CDD PAL-HAL 58 524 IPR001106 -
Tan11g0873 714 NCBIfam phenylalanine ammonia-lyase 26 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan11g0873 714 Gene3D - 20 260 IPR024083 -
Tan11g0873 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1452 Tan-Chr10:19872823 Tan11g0873 Tan-Chr11:7147840 0.00E+00 dispersed
Tan10g1453 Tan-Chr10:19921599 Tan11g0873 Tan-Chr11:7147840 2.90E-29 dispersed
Tan10g1454 Tan-Chr10:19922572 Tan11g0873 Tan-Chr11:7147840 1.90E-166 dispersed
Tan11g0873 Tan-Chr11:7147840 Tan03g1079 Tan-Chr3:67008633 0.00E+00 wgd
Tan11g0873 Tan-Chr11:7147840 Tan04g0612 Tan-Chr4:5167652 1.00E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0873 K10775 - csv:101206890 1234.94