Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g0926 ATGTTTGCAACCACTGGCATTCTGTTCTTCATTTGGCTTTTGAGCTCCTCTCTGCCTCCAATGGCTGCTTTCACTTTCAATCTCACTGTCCCACATCTTCTTCCAGATCCTGAAACTGTTGCTTATGAAGTTCAGAGGAGTGTGAATGAATCTTTTTCCAGAAGGCAAATGCTGTCAATTCATTCGAAAGGTCAATCAAATTCATGCCAAACCGGAAACCCTATTGATGATTGTTGGCGCTGCGACTCGAACTGGCAAGCCAATCGCCAACGGCTCGCCGATTGCGGCATTGGATTTGGCCGAGACGCCATGGGAGGCAAAGGAGGTCAGATCTATATAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGACGAACCTCTCTGGATCGTCTTTGCCGCCGACATGACGATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGCGCTAACGTTCACATCACAGGCGGCGGCTGCATCACACTCCAATACATCTCGAATGTAATCATCCACAACATCAACATTCACCACTGTATCCCTACCGGCCACACCAATGTCCGATCGAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGACGGAATCTCGATCTTCAGCTCCCGCAACATCTGGATCGACCATTGCTCACTCTCGTACTGTACCGATGGATTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCTCGCCGGACTCGGGGATGCAGGTGACGATCGCGTTTAATTTGTTCGGCGAGAAGCTAGTTCAGCGGATGCCGCGGTGCCGGCGGGGGTATATTCACGTCGTCAACAACGATTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTGGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCTCCGGGGAATCCCAATGCAAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGACTGGTCGGAATGGAACTGGAGAACGGAGGGGGATATAATGGTAAATGGAGCTTTTTTTGTGCCGTCCGGCGAAGGACTCAGCAATATGTACGTTAAAGCTTCCAGTGTGGCGCCCAAATCCGCCGCTCTCGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGGCCCAGGGAGAGTAGACAGAGCAACTCGTATCCTGGAGACGAAAGCTCGTCCAGTTCGGGGTCCAGTGGCAGCGATGGCGGTGGCGACTACTTCGGGATGATATTCGGTGGGGGCGGGTTGAATAGTGCACCACCACCATCTCTTTCAGTTGTTAACATGATCATTCTTACCCTGCTTACTATTTTAGTTCTGTACACGAACTCAAACTATGATGCTTTCTTATCATTGACAACATTGTAG 1485 52.32 MFATTGILFFIWLLSSSLPPMAAFTFNLTVPHLLPDPETVAYEVQRSVNESFSRRQMLSIHSKGQSNSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYIVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFSPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGPRESRQSNSYPGDESSSSSGSSGSDGGGDYFGMIFGGGGLNSAPPPSLSVVNMIILTLLTILVLYTNSNYDAFLSLTTL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7527333 7533682 - Tan0012265.1 Tan11g0926 767863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g0926 494 Gene3D - 72 414 IPR012334 -
Tan11g0926 494 MobiDBLite consensus disorder prediction 413 439 - -
Tan11g0926 494 MobiDBLite consensus disorder prediction 416 439 - -
Tan11g0926 494 FunFam Pectate lyase 72 414 - -
Tan11g0926 494 SUPERFAMILY Pectin lyase-like 73 412 IPR011050 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Tan11g0926 494 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Tan11g0926 494 SMART amb_all 147 344 IPR002022 -
Tan11g0926 494 Pfam Pectate lyase 155 324 IPR002022 -
Tan11g0926 494 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0641 Tan-Chr4:5411468 Tan11g0926 Tan-Chr11:7527333 1.40E-191 dispersed
Tan11g0685 Tan-Chr11:5943029 Tan11g0926 Tan-Chr11:7527333 8.50E-141 dispersed
Tan03g1118 Tan-Chr3:67304374 Tan11g0926 Tan-Chr11:7527333 4.50E-181 transposed
Tan11g0926 Tan-Chr11:7527333 Tan04g0640 Tan-Chr4:5408393 3.50E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g0926 K01728 - csv:101207535 868.996