Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1054 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCGGGGGAACAAGAGATAGCTCGGGAGCATGAAGCTGAGGCTACTCTGGAGGAAGATTATAGCGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGGATGCTTTTGAGGCGACTCAAAGAACAAACAAAAGACAAGGAAGGGGCTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCACGAAGGAAGAAGATGTCTCGGGCTCAGGACGGGATCCTGAAATATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAGGGGAAGCCAGTAAGCGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCTGCAGCCATTGCCAAATATCAGGCTGACCATGCAATTCCTGGGAAGAATGATGACTGCAATACAGTGACATCCACGCCTCACACTTTACAAGAGCTCCAAGATACGACCCTTGGATCACTTTTGTCTGCTCTGATGCAGCACTGCGATCCGCCCCAGCGGCGTTTTCCACTGGAGAAGGGAGTTTCCCCACCGTGGTGGCCAACGGGAAACGAGGAGTGGTGGCCAGAATTGGGACTCCCCAAGGACCAGGGGCCTCCCCCTTATAAGAAGCCGCATGATCTGAAGAAGGCTTGGAAGGTCAGCGTTCTCACTGCTGTGATTAAACACATGTCGCCCGACATCGCCAAAATTCGGAAGCTTGTTCGTCAGTCTAAATGTTTGCAGGACAAGATGACTGCAAAGGAGAGTGCTACATGGCTGGCCATTGTAAACCAAGAAGAAGCCTTGGCCAGGAAAATGTATCCTGATAAATGCCCGCCTGTGTCGATTTGCGGGAGTGGATCTCTTTTAATCAGCGACACTAGTGATTACGACGTTGAAGGAGTAGAAGATGAACCAAATGTCGAAACGGAGGAAAGCAAGCCTCATGATCTCAATTTCTTTAATATGGGAGCTTCTGGACTTAGAGAGAGGCTTATGATGCCATTAGTGGGACCCCAGATTAAGGAAGAGCTCATGGAGAACAATTCAGACTTTATTCAAAAGAGGAAGCAGATGACTGATGAGTCAAATACAATGACGACTCAGAAGATATATACTTGCGAGTATTCTCAATGCCCGTATAACAGTTCGCGCCTCGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCATATATTTGGCATGCCAAGCTTTCAAACTAACGATGATAAATCATCCCCAGTGCCTCCATCCTTCAACCACTCTAAGCCACCTACTCGGCCGATGAACCCCACTCCACCCTTCAGGGTATCGGGACTTGGACTTCCAGAAGATGGCCAGAAAATGATCACTGACCTTCTGAGTTTCTACGATTCCAACCATCAACAGGACAAAAACTTGAATTCCGGGAACGTCGAAGCAAGAGACGATCACAACTCACAGCTGCCAAAATTCCAACTCCAAGTTGATGATAACTTGTATTGCCAAGGAGCAATGGTGGGAAATAATAGCATGCCAATGCAGCACGTTGATTTTTCTTCCACAAAAGTACCATTCGACGAGTACAAGGCGTTCGATTCTCCCTTCGGCATGTATCCCAACGATAACATTCCGGACTTCAGATTTGGTTCTCCATTTAACTTGGCATCAATTGATTATCCAGTAGACCCACCGTTGCCAAAGCAAGATACACAGTTGTGGTACCTTTGA 1836 46.9 MMNTMGIFEDIGFCRNLEYFSAPPGEQEIAREHEAEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQTKDKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKMYPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVETEESKPHDLNFFNMGASGLRERLMMPLVGPQIKEELMENNSDFIQKRKQMTDESNTMTTQKIYTCEYSQCPYNSSRLGFLDRTSRNNHQLNCPFRSDSSHIFGMPSFQTNDDKSSPVPPSFNHSKPPTRPMNPTPPFRVSGLGLPEDGQKMITDLLSFYDSNHQQDKNLNSGNVEARDDHNSQLPKFQLQVDDNLYCQGAMVGNNSMPMQHVDFSSTKVPFDEYKAFDSPFGMYPNDNIPDFRFGSPFNLASIDYPVDPPLPKQDTQLWYL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8290917 8294709 + Tan0020763.1 Tan11g1054 767991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1054 611 MobiDBLite consensus disorder prediction 69 94 - -
Tan11g1054 611 Coils Coil 36 87 - -
Tan11g1054 611 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Tan11g1054 611 FunFam Ethylene insensitive 3-like 1 83 161 - -
Tan11g1054 611 Coils Coil 373 393 - -
Tan11g1054 611 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Tan11g1054 611 MobiDBLite consensus disorder prediction 460 474 - -
Tan11g1054 611 MobiDBLite consensus disorder prediction 443 459 - -
Tan11g1054 611 MobiDBLite consensus disorder prediction 443 474 - -
Tan11g1054 611 FunFam Ethylene insensitive 3-like 1 171 308 - -
Tan11g1054 611 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 607 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Tan11g1054 611 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Tan11g1054 611 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1054 K14514 - - csv:101214396 1100.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0870 Tan-Chr9:60008748 Tan11g1054 Tan-Chr11:8290917 9.50E-96 dispersed
Tan09g0871 Tan-Chr9:60008748 Tan11g1054 Tan-Chr11:8290917 9.50E-96 dispersed
Tan09g0930 Tan-Chr9:61316748 Tan11g1054 Tan-Chr11:8290917 9.90E-205 dispersed
Tan11g1054 Tan-Chr11:8290917 Tan11g1056 Tan-Chr11:8290917 0.00E+00 dispersed
Tan11g1054 Tan-Chr11:8290917 Tan11g1055 Tan-Chr11:8290917 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0930 . 2 627 EIL Transcription Factor Family AT2G27050 58.6 2.4e-192 669.5
Tan11g1054 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan11g1055 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan11g1056 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan09g0869 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0870 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0871 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0869 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0870 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0871 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0869 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0870 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0871 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0930 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.0e-104 376.7
Tan11g1054 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan11g1055 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan11g1056 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan09g0930 . 3 627 EIL Transcription Factor Family AT3G20770 62.0 6.0e-210 728.0
Tan11g1054 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan11g1055 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan11g1056 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan09g0869 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0870 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0871 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0869 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0870 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0871 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0869 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
Tan09g0870 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
Tan09g0871 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28699 PF04873 EIN3 2.90E-132 No_clan Tan TF