Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1085 ATGGCGGCTACAGTTCCGGCACCGGCGACTGCCGCTCCAGTTCAAACGGCGGCGATTCCTCCTCTCAATGGCTCTGTGGCCACTGGAGGTGGGTTTTTGAGTTCTTCATTGTATGTTGGCGATCTGGACCAGACTGTGAACGAGGGACAGCTTTTGGAACTCTTCGGCCAAGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATACGCTTATGTTAATTTTGGCAATCATCAGGATGCTTCCAGCGCCTTGGAACATTTGAATTTCACCCCTATTAATGGGAAGCCTATCAGGATTATGATGTCTAATCGAGATCCTAGCATTCGAAAAAGTGGCTATGCAAATGTTTTTATCAAGAATCTGGACACGTCAATTGATAACAAGGCGTTACATGATACATTTGCTACCTTTGGTACTGTTCTTTCTTGTAAAGTTGCTGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAAGTGAGGAAGCTGCTGAAAGTGCAATAATTAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAGGAAAGGATTCGAGCAAATGGATCGATGTTTACTAATGTTTATGTGAAGAATTTACCAGAAACTACAACAGATGATGACCTAAAAAATCTTTTTGCTACACATGGTGCCATTACTAGTGCAGTTGTCATGAGAGACTCGAATGGGAAGTCCAGATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAATGGTACCATCCTTGGTGATGACAAGGTTCTGTATGTAGGCAGGGCTCAGAGGAAAGCAGAAAGGGAGGCTGAGTTGAAAGCGAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAACTTGTATATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTAGCCTTTTCTTCACCAGATGAAGCAACAAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGGAAACCTCTGTATGTGGCTGTTGCCCAGCGCAAAGAAGAGAGAAAGGCTCGGCTGCAGGCACAATTTGCTCAAATCCGAGCAGCTGGTGGAATATCATCTTTGCCTTCAGGAATTCCAGGATTTCATCCAGGAGCCCCACGCCTTGCACCTCAACAGCTGTATTATGGTCAGGGGAACACCGGGCTGGTGCCCCCACAGCCTGCTGGATATGGCTTCCAGCCTCAACTCATGACTGGAATGCGACCTGGTATGGGCCCGAACTTCATCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCCGCACCACGCTCGGGGATGAGGCGAGGTGGAAATTCACAACCAGTTCAGCAGCAGCAGTTACTGCTCCGCGGCTCTGGACAAGGTTTTAGATACATGAACAATGCACGTAATGGATTAGAGCCGCCCGTCCTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTGGCTTTTGATAGTTCTGGAGTGTCTAGCTCCCCCATTGACATCCAGCGATCAAGGGCCGTGCCTTCTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCTGAAAATCAGCGTGTGATGCTCGGCGAGCAGCTGTATCCACTTGTGGAACGTCTCGAGCCAGGTCATGCAGCAAAGGTAACTGGAATGTTGTTGGAGATGGACCAACCAGAGGTCCTTCATCTCATCGAGTCGCCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCATCGGAACCCGAGCTCTCTGATCAGCTTGGTGCATTGGCCCTGACCAAGTGA 1959 46.96 MAATVPAPATAAPVQTAAIPPLNGSVATGGGFLSSSLYVGDLDQTVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFGNHQDASSALEHLNFTPINGKPIRIMMSNRDPSIRKSGYANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFESEEAAESAIIRLNGMLLNDKQVYVGHFIRHQERIRANGSMFTNVYVKNLPETTTDDDLKNLFATHGAITSAVVMRDSNGKSRCFGFVNFQNTDSAAAAVEKLNGTILGDDKVLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAPRLAPQQLYYGQGNTGLVPPQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPAPRSGMRRGGNSQPVQQQQLLLRGSGQGFRYMNNARNGLEPPVLPQGLVGPMMPLAFDSSGVSSSPIDIQRSRAVPSSTLASALASATPENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8607392 8611758 + Tan0013503.1 Tan11g1085 768022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1085 652 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676(InterPro)
Tan11g1085 652 FunFam Polyadenylate-binding protein 300 405 - -
Tan11g1085 652 SMART rrm2_1 36 109 IPR003954 GO:0003676(InterPro)
Tan11g1085 652 SMART rrm2_1 124 196 IPR003954 GO:0003676(InterPro)
Tan11g1085 652 SMART rrm2_1 318 389 IPR003954 GO:0003676(InterPro)
Tan11g1085 652 SMART rrm2_1 214 286 IPR003954 GO:0003676(InterPro)
Tan11g1085 652 FunFam Polyadenylate-binding protein 556 638 - -
Tan11g1085 652 FunFam Polyadenylate-binding protein 205 299 - -
Tan11g1085 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Gene3D - 124 197 IPR012677 -
Tan11g1085 652 PANTHER RNA BINDING PROTEIN 25 214 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Tan11g1085 652 FunFam Polyadenylate-binding protein 14 117 - -
Tan11g1085 652 CDD RRM3_I_PABPs 212 292 - -
Tan11g1085 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 560 637 IPR002004 GO:0003723(InterPro)
Tan11g1085 652 Coils Coil 392 412 - -
Tan11g1085 652 Gene3D - 556 637 - -
Tan11g1085 652 SMART poly_2 572 635 IPR002004 GO:0003723(InterPro)
Tan11g1085 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Gene3D - 315 413 IPR012677 -
Tan11g1085 652 Coils Coil 286 306 - -
Tan11g1085 652 SMART rrm1_1 318 390 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 SMART rrm1_1 36 109 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 SMART rrm1_1 124 196 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 SMART rrm1_1 214 287 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 FunFam Polyadenylate-binding protein 118 204 - -
Tan11g1085 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 304 321 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Tan11g1085 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Tan11g1085 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 322 337 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Tan11g1085 652 PRINTS Paraneoplastic encephalomyelitis antigen family signature 337 349 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Tan11g1085 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Gene3D - 208 314 IPR012677 -
Tan11g1085 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Pfam Poly-adenylate binding protein, unique domain 567 632 IPR002004 GO:0003723(InterPro)
Tan11g1085 652 Gene3D - 33 123 IPR012677 -
Tan11g1085 652 CDD RRM2_I_PABPs 121 197 IPR045305 -
Tan11g1085 652 Pfam RNA recognition motif 125 193 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Pfam RNA recognition motif 319 387 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Pfam RNA recognition motif 215 282 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 Pfam RNA recognition motif 37 107 IPR000504 GO:0003723(InterPro)
Tan11g1085 652 SUPERFAMILY PABC (PABP) domain 468 639 IPR036053 GO:0003723(InterPro)
Tan11g1085 652 CDD RRM4_I_PABPs 316 394 - -
Tan11g1085 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 633 IPR006515 GO:0003723(InterPro)
Tan11g1085 652 SUPERFAMILY RNA-binding domain, RBD 213 398 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0686 Tan-Chr1:6535752 Tan11g1085 Tan-Chr11:8607392 2.70E-189 dispersed
Tan02g0926 Tan-Chr2:10989986 Tan11g1085 Tan-Chr11:8607392 4.60E-189 dispersed
Tan08g1805 Tan-Chr8:70006623 Tan11g1085 Tan-Chr11:8607392 1.80E-124 dispersed
Tan08g1806 Tan-Chr8:70006623 Tan11g1085 Tan-Chr11:8607392 7.40E-106 dispersed
Tan10g1187 Tan-Chr10:11963595 Tan11g1085 Tan-Chr11:8607392 1.20E-27 dispersed
Tan11g1085 Tan-Chr11:8607392 Tan09g2044 Tan-Chr9:70948428 6.80E-07 dispersed
Tan11g1085 Tan-Chr11:8607392 Tan11g1088 Tan-Chr11:8629068 1.40E-07 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1085 K13126 - csv:101219081 1130.55