Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1085 | ATGGCGGCTACAGTTCCGGCACCGGCGACTGCCGCTCCAGTTCAAACGGCGGCGATTCCTCCTCTCAATGGCTCTGTGGCCACTGGAGGTGGGTTTTTGAGTTCTTCATTGTATGTTGGCGATCTGGACCAGACTGTGAACGAGGGACAGCTTTTGGAACTCTTCGGCCAAGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATACGCTTATGTTAATTTTGGCAATCATCAGGATGCTTCCAGCGCCTTGGAACATTTGAATTTCACCCCTATTAATGGGAAGCCTATCAGGATTATGATGTCTAATCGAGATCCTAGCATTCGAAAAAGTGGCTATGCAAATGTTTTTATCAAGAATCTGGACACGTCAATTGATAACAAGGCGTTACATGATACATTTGCTACCTTTGGTACTGTTCTTTCTTGTAAAGTTGCTGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAAGTGAGGAAGCTGCTGAAAGTGCAATAATTAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAGGAAAGGATTCGAGCAAATGGATCGATGTTTACTAATGTTTATGTGAAGAATTTACCAGAAACTACAACAGATGATGACCTAAAAAATCTTTTTGCTACACATGGTGCCATTACTAGTGCAGTTGTCATGAGAGACTCGAATGGGAAGTCCAGATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAATGGTACCATCCTTGGTGATGACAAGGTTCTGTATGTAGGCAGGGCTCAGAGGAAAGCAGAAAGGGAGGCTGAGTTGAAAGCGAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAACTTGTATATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTAGCCTTTTCTTCACCAGATGAAGCAACAAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGGAAACCTCTGTATGTGGCTGTTGCCCAGCGCAAAGAAGAGAGAAAGGCTCGGCTGCAGGCACAATTTGCTCAAATCCGAGCAGCTGGTGGAATATCATCTTTGCCTTCAGGAATTCCAGGATTTCATCCAGGAGCCCCACGCCTTGCACCTCAACAGCTGTATTATGGTCAGGGGAACACCGGGCTGGTGCCCCCACAGCCTGCTGGATATGGCTTCCAGCCTCAACTCATGACTGGAATGCGACCTGGTATGGGCCCGAACTTCATCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCCGCACCACGCTCGGGGATGAGGCGAGGTGGAAATTCACAACCAGTTCAGCAGCAGCAGTTACTGCTCCGCGGCTCTGGACAAGGTTTTAGATACATGAACAATGCACGTAATGGATTAGAGCCGCCCGTCCTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTGGCTTTTGATAGTTCTGGAGTGTCTAGCTCCCCCATTGACATCCAGCGATCAAGGGCCGTGCCTTCTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCTGAAAATCAGCGTGTGATGCTCGGCGAGCAGCTGTATCCACTTGTGGAACGTCTCGAGCCAGGTCATGCAGCAAAGGTAACTGGAATGTTGTTGGAGATGGACCAACCAGAGGTCCTTCATCTCATCGAGTCGCCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCATCGGAACCCGAGCTCTCTGATCAGCTTGGTGCATTGGCCCTGACCAAGTGA | 1959 | 46.96 | MAATVPAPATAAPVQTAAIPPLNGSVATGGGFLSSSLYVGDLDQTVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFGNHQDASSALEHLNFTPINGKPIRIMMSNRDPSIRKSGYANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFESEEAAESAIIRLNGMLLNDKQVYVGHFIRHQERIRANGSMFTNVYVKNLPETTTDDDLKNLFATHGAITSAVVMRDSNGKSRCFGFVNFQNTDSAAAAVEKLNGTILGDDKVLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAPRLAPQQLYYGQGNTGLVPPQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPAPRSGMRRGGNSQPVQQQQLLLRGSGQGFRYMNNARNGLEPPVLPQGLVGPMMPLAFDSSGVSSSPIDIQRSRAVPSSTLASALASATPENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK | 652 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8607392 | 8611758 | + | Tan0013503.1 | Tan11g1085 | 768022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1085 | 652 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 200 | IPR035979 | GO:0003676(InterPro) | |
Tan11g1085 | 652 | FunFam | Polyadenylate-binding protein | 300 | 405 | - | - | |
Tan11g1085 | 652 | SMART | rrm2_1 | 36 | 109 | IPR003954 | GO:0003676(InterPro) | |
Tan11g1085 | 652 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676(InterPro) | |
Tan11g1085 | 652 | SMART | rrm2_1 | 318 | 389 | IPR003954 | GO:0003676(InterPro) | |
Tan11g1085 | 652 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676(InterPro) | |
Tan11g1085 | 652 | FunFam | Polyadenylate-binding protein | 556 | 638 | - | - | |
Tan11g1085 | 652 | FunFam | Polyadenylate-binding protein | 205 | 299 | - | - | |
Tan11g1085 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 113 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Gene3D | - | 124 | 197 | IPR012677 | - | |
Tan11g1085 | 652 | PANTHER | RNA BINDING PROTEIN | 25 | 214 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Tan11g1085 | 652 | FunFam | Polyadenylate-binding protein | 14 | 117 | - | - | |
Tan11g1085 | 652 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Tan11g1085 | 652 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 560 | 637 | IPR002004 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Coils | Coil | 392 | 412 | - | - | |
Tan11g1085 | 652 | Gene3D | - | 556 | 637 | - | - | |
Tan11g1085 | 652 | SMART | poly_2 | 572 | 635 | IPR002004 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Gene3D | - | 315 | 413 | IPR012677 | - | |
Tan11g1085 | 652 | Coils | Coil | 286 | 306 | - | - | |
Tan11g1085 | 652 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | SMART | rrm1_1 | 36 | 109 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | FunFam | Polyadenylate-binding protein | 118 | 204 | - | - | |
Tan11g1085 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 304 | 321 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Tan11g1085 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 213 | 228 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Tan11g1085 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 322 | 337 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Tan11g1085 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 337 | 349 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Tan11g1085 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Gene3D | - | 208 | 314 | IPR012677 | - | |
Tan11g1085 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Pfam | Poly-adenylate binding protein, unique domain | 567 | 632 | IPR002004 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Gene3D | - | 33 | 123 | IPR012677 | - | |
Tan11g1085 | 652 | CDD | RRM2_I_PABPs | 121 | 197 | IPR045305 | - | |
Tan11g1085 | 652 | Pfam | RNA recognition motif | 125 | 193 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Pfam | RNA recognition motif | 319 | 387 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Pfam | RNA recognition motif | 215 | 282 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | Pfam | RNA recognition motif | 37 | 107 | IPR000504 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | SUPERFAMILY | PABC (PABP) domain | 468 | 639 | IPR036053 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Tan11g1085 | 652 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 633 | IPR006515 | GO:0003723(InterPro) | |
Tan11g1085 | 652 | SUPERFAMILY | RNA-binding domain, RBD | 213 | 398 | IPR035979 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0686 | Tan-Chr1:6535752 | Tan11g1085 | Tan-Chr11:8607392 | 2.70E-189 | dispersed | |
Tan02g0926 | Tan-Chr2:10989986 | Tan11g1085 | Tan-Chr11:8607392 | 4.60E-189 | dispersed | |
Tan08g1805 | Tan-Chr8:70006623 | Tan11g1085 | Tan-Chr11:8607392 | 1.80E-124 | dispersed | |
Tan08g1806 | Tan-Chr8:70006623 | Tan11g1085 | Tan-Chr11:8607392 | 7.40E-106 | dispersed | |
Tan10g1187 | Tan-Chr10:11963595 | Tan11g1085 | Tan-Chr11:8607392 | 1.20E-27 | dispersed | |
Tan11g1085 | Tan-Chr11:8607392 | Tan09g2044 | Tan-Chr9:70948428 | 6.80E-07 | dispersed | |
Tan11g1085 | Tan-Chr11:8607392 | Tan11g1088 | Tan-Chr11:8629068 | 1.40E-07 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1085 | K13126 | - | csv:101219081 | 1130.55 |