Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1119 ATGGATCAAAATATTGAAGGACTGCCAGATTACAAAGATATCAAACAAAATGAATTCTGCTATCGGAAACACAAGAAGCAGAAGGAGGAGGATATTGCAGTTTGTGACTGCAAAGTTGACGCCAGTGATCCTGATAGCACTTGTGGAGAGGGGTGCTTGAATGTACTAACCAGCACTGAGTGTACTCCTGGATATTGTCCCTGTGGAGTTCATTGCAAGAATCAGAAATTTCAGAAATGTGAGTATGCAAGAACAAAGTTGTTCAAAACTGAAGGCCGTGGGTGGGGCCTTTTAGCTGATGAGGACATAAAGAGTGGACAATTTATTATTGAATATTGTGGGGAAGTTATATCTTGGAAGGAAGCAAAACGGAGATCCCATGCTTATGAAAATCAGGGACTCAAAGATGCTTACATCATCTCGCTCAATGCCTCTGAATCAATTGATGCCACTAGAAAGGGAAGTCTTGCTAGATTTATAAATCATTCATGCTGCCCAAACTGTGAGACGAGGAAGTGGAATGCGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTCCCATTGGGACTGAATTGGCGTATGATTATAATTTCGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTCTGTGGTGCAAGCAGCTGTTCAGGATTCCTTGGAGCCAAGTCTCGCGGCTTCCTGGAGGATACTTATTTGTGGGAAGATGACGATGATAGGTATTCAGTTGAGAAAATTCCACTCTATGATTCTGCAGAGGATGAGCCTTTCGCTAAGTTCCATTCGGCATTTGAGTATGAGGGCTATCTGAAAAATGAGAACTCAATGATCATGGACGATAATTTGGGAGCTGAACAGCAGCTGGGATCCACTGCATTTATCGATACCTCGAACAATTCAGTTCAATTGCAAAATATAGTTGTGAGAGAGATTAGAAATAAAGCAAAAGAGGAGCCAGAAGACCATCCAGAAAATACGCAGCAGAGCTTTGCACACCAGAATGCTATGATATCTCGTATCAGGAGTAATACTGCATGCCGTAATTATCGCATTGGGCCAGGATCTGTGGTCAAGAAACGATCGAGAAACTTATCTAATGGAAGGGCAAAAAATTTAACCCTGAAGCAAGTGGATGCAAAATATGTTGCTCGACTGTTAGAGTTGAAGGAAGCTCAAGAAGAAGTCTTACAGTATGAGGAAATGAAGAATAAAGCTACCTCTGAACTTGATTCGTTGTACAACGAAATACGACCTGCCATTGAAGAATATGAGAGGGATAGCCAAGACAATGTAGCTACCAGTGTTGCGGAGAAGTGGATAGAAGCAAGCTGTTTGAAACTGAAGGCGGAATTTGATCTTTATTCTTCTATAGTCAGAAATGTTGCCTGCACTCCTCTAAGGTCAGGTGTCTCTACTGAACCTCAACCTCTTGAAGTAGAAGTCGATGAAGGCTCGCTAGTTCATATCGGAGTGCCTACAACAGTGGAGCAGTTCTTATGA 1506 42.3 MDQNIEGLPDYKDIKQNEFCYRKHKKQKEEDIAVCDCKVDASDPDSTCGEGCLNVLTSTECTPGYCPCGVHCKNQKFQKCEYARTKLFKTEGRGWGLLADEDIKSGQFIIEYCGEVISWKEAKRRSHAYENQGLKDAYIISLNASESIDATRKGSLARFINHSCCPNCETRKWNALGEIRVGIFAKQDIPIGTELAYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDEPFAKFHSAFEYEGYLKNENSMIMDDNLGAEQQLGSTAFIDTSNNSVQLQNIVVREIRNKAKEEPEDHPENTQQSFAHQNAMISRIRSNTACRNYRIGPGSVVKKRSRNLSNGRAKNLTLKQVDAKYVARLLELKEAQEEVLQYEEMKNKATSELDSLYNEIRPAIEEYERDSQDNVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSGVSTEPQPLEVEVDEGSLVHIGVPTTVEQFL 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8833335 8847314 - Tan0011403.2 Tan11g1119 768056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1119 501 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Tan11g1119 501 SMART shorttest3 30 82 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Tan11g1119 501 SUPERFAMILY SET domain 9 220 IPR046341 -
Tan11g1119 501 Pfam SET domain 94 200 IPR001214 GO:0005515(InterPro)
Tan11g1119 501 SMART set_7 83 206 IPR001214 GO:0005515(InterPro)
Tan11g1119 501 Gene3D SET domain 1 233 IPR046341 -
Tan11g1119 501 PANTHER SET DOMAIN PROTEINS 6 473 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Tan11g1119 501 FunFam Histone-lysine N-methyltransferase 1 235 - -
Tan11g1119 501 ProSiteProfiles SET domain profile. 78 200 IPR001214 GO:0005515(InterPro)
Tan11g1119 501 Pfam AWS domain 43 80 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Tan11g1119 501 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Tan11g1119 501 Coils Coil 390 417 - -
Tan11g1119 501 SMART PostSET_3 207 223 IPR003616 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1119 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1119 Tan-Chr11:8833335 Tan11g2037 Tan-Chr11:40936200 1.50E-41 dispersed
Tan11g1118 Tan-Chr11:8833335 Tan11g1119 Tan-Chr11:8833335 8.40E-284 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1348 . . . . . . . . . Cmo15g00591 . . . . . . . Bhi04g01759 Tan11g1119 . . . . . . . . . . . . . . . . . . . Cme03g00297 . . . . . . . . . . . . . . Car15g00543 . . . . . . . . . . . . . . . . . . Chy03g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28706 PF00856 SET 6.80E-19 No_clan Tan TR