Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1138 | ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTCGAGGTGAGGCTGTCTGGCCATTCCAGGGGTAAATCTCATGGACCGGTTCATGAGTTTCATGATGAACCTCTGCTAATCCAGACTAGCCGCTGGGCTAGCCTTCCTCCTGAATTATTATGTGATGTGGTCCGGAGATTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCCTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATCGTTAAAAGTCCCGAGTTCTCTGGGAAAATTACCTTCCCCATCGCCTTGAAGCAGCCTGGACCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGAAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTACGTTATATCGTTGGCTGCAGACGATATATCAAGATCGAGCAATGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAGCCTCCGTACAACAGCAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCGAAGGTCCCGGCTGGTAGTTACAGCATTGCACAAATTGCATACGAGTTGAATGTACTAGGTACAAGGGGACCCCGGAGGATGCACTGTACCATGTACTCAATCCCCATTTCATCTCTTGAGCCAGGTTGCTCCGTTCCGGGCCAGCCTGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATCTCATTCTCCAAGTCGATCGATCACTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATAGCGAGGGGAAGGACCGACCCTTGATTCTCAGAAACAAGGCACCAAGATGGCACGAGCAATTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGAGTGACCGTTGCATCTGTAAAGAATTTTCAGCTGATTGCCGCAACCTCACCCGCTGCAGAAGTGCCAGTACCGTCGCAGCCACCTCCCCAGCCCGCCCAACCTACCCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTATCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG | 1299 | 47.65 | MSFRSILRDVRDGFGSLSRRSFEVRLSGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPISSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDSEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8989235 | 8993720 | - | Tan0021409.1 | Tan11g1138 | 768075 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1138 | 432 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Tan11g1138 | 432 | MobiDBLite | consensus disorder prediction | 369 | 388 | - | - | |
Tan11g1138 | 432 | FunFam | Tubby-like F-box protein | 110 | 432 | - | - | |
Tan11g1138 | 432 | Gene3D | Tubby Protein; Chain A | 113 | 426 | IPR025659 | - | |
Tan11g1138 | 432 | PANTHER | TUBBY-RELATED | 47 | 431 | - | - | |
Tan11g1138 | 432 | Gene3D | - | 48 | 101 | - | - | |
Tan11g1138 | 432 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 389 | 408 | IPR000007 | - | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 410 | 432 | IPR000007 | - | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Tan11g1138 | 432 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Tan11g1138 | 432 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515(InterPro) | |
Tan11g1138 | 432 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - | |
Tan11g1138 | 432 | ProSitePatterns | Tub family signature 2. | 417 | 432 | IPR018066 | - | |
Tan11g1138 | 432 | Pfam | Tub family | 114 | 427 | IPR000007 | - | |
Tan11g1138 | 432 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 432 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0725 | Tan-Chr1:6860784 | Tan11g1138 | Tan-Chr11:8989235 | 2.30E-192 | dispersed | |
Tan01g3331 | Tan-Chr1:90649740 | Tan11g1138 | Tan-Chr11:8989235 | 1.00E-208 | dispersed | |
Tan06g2627 | Tan-Chr6:78854774 | Tan11g1138 | Tan-Chr11:8989235 | 4.50E-123 | dispersed | |
Tan10g0947 | Tan-Chr10:8248324 | Tan11g1138 | Tan-Chr11:8989235 | 2.50E-121 | dispersed | |
Tan11g1138 | Tan-Chr11:8989235 | Tan11g1139 | Tan-Chr11:8989235 | 2.70E-254 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28712 | PF01167 | Tub | 8.20E-116 | CL0395 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1138 | K19600 | - | csv:101203074 | 834.713 |