Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1139 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTCGAGGTGAGGCTGTCTGGCCATTCCAGGGGTAAATCTCATGGACCGGTTCATGAGTTTCATGATGAACCTCTGCTAATCCAGACTAGCCGCTGGGCTAGCCTTCCTCCTGAATTATTATGTGATGTGGTCCGGAGATTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCCTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATCGTTAAAAGTCCCGAGTTCTCTGGGAAAATTACCTTCCCCATCGCCTTGAAGCAGCCTGGACCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGAAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTACGTTATATCGTTGGCTGCAGACGATATATCAAGATCGAGCAATGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAGCCTCCGTACAACAGCAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCGAAGGTCCCGGCTGGTAGTTACAGCATTGCACAAATTGCATACGAGTTGAATGTACTAGGTACAAGGGGACCCCGGAGGATGCACTGTACCATGTACTCAATCCCCATTTCATCTCTTGAGCCAGGTTGCTCCGTTCCGGGCCAGCCTGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATCTCATTCTCCAAGTCGATCGATCACTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATAGCGAGGGGAAGGACCGACCCTTGATTCTCAGAAACAAGGCACCAAGATGGCACGAGCAATTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGAGTGACCGTTGCATCTGTAAAGAATTTTCAGCTGATTGCCGCAACCTCACCCGCTGCAGAAGTGCCAGTACCGTCGCAGCCACCTCCCCAGCCCGCCCAACCTACCCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTATCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 47.65 MSFRSILRDVRDGFGSLSRRSFEVRLSGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPISSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDSEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8989235 8993567 - Tan0021409.2 Tan11g1139 768076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1139 432 CDD F-box_AtTLP-like 53 97 - -
Tan11g1139 432 MobiDBLite consensus disorder prediction 369 388 - -
Tan11g1139 432 FunFam Tubby-like F-box protein 110 432 - -
Tan11g1139 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Tan11g1139 432 PANTHER TUBBY-RELATED 47 431 - -
Tan11g1139 432 Gene3D - 48 101 - -
Tan11g1139 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Tan11g1139 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Tan11g1139 432 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Tan11g1139 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Tan11g1139 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Tan11g1139 432 Pfam Tub family 114 427 IPR000007 -
Tan11g1139 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1138 Tan-Chr11:8989235 Tan11g1139 Tan-Chr11:8989235 2.70E-254 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28713 PF01167 Tub 8.20E-116 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1139 K19600 - csv:101203074 834.713