Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1139 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTCGAGGTGAGGCTGTCTGGCCATTCCAGGGGTAAATCTCATGGACCGGTTCATGAGTTTCATGATGAACCTCTGCTAATCCAGACTAGCCGCTGGGCTAGCCTTCCTCCTGAATTATTATGTGATGTGGTCCGGAGATTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCCTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATCGTTAAAAGTCCCGAGTTCTCTGGGAAAATTACCTTCCCCATCGCCTTGAAGCAGCCTGGACCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGAAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTACGTTATATCGTTGGCTGCAGACGATATATCAAGATCGAGCAATGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAGCCTCCGTACAACAGCAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCGAAGGTCCCGGCTGGTAGTTACAGCATTGCACAAATTGCATACGAGTTGAATGTACTAGGTACAAGGGGACCCCGGAGGATGCACTGTACCATGTACTCAATCCCCATTTCATCTCTTGAGCCAGGTTGCTCCGTTCCGGGCCAGCCTGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATCTCATTCTCCAAGTCGATCGATCACTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATAGCGAGGGGAAGGACCGACCCTTGATTCTCAGAAACAAGGCACCAAGATGGCACGAGCAATTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGAGTGACCGTTGCATCTGTAAAGAATTTTCAGCTGATTGCCGCAACCTCACCCGCTGCAGAAGTGCCAGTACCGTCGCAGCCACCTCCCCAGCCCGCCCAACCTACCCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTATCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 47.65 MSFRSILRDVRDGFGSLSRRSFEVRLSGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPISSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDSEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8989235 8993567 - Tan0021409.2 Tan11g1139 768076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1139 432 CDD F-box_AtTLP-like 53 97 - -
Tan11g1139 432 MobiDBLite consensus disorder prediction 369 388 - -
Tan11g1139 432 FunFam Tubby-like F-box protein 110 432 - -
Tan11g1139 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Tan11g1139 432 PANTHER TUBBY-RELATED 47 431 - -
Tan11g1139 432 Gene3D - 48 101 - -
Tan11g1139 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Tan11g1139 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Tan11g1139 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Tan11g1139 432 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Tan11g1139 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Tan11g1139 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Tan11g1139 432 Pfam Tub family 114 427 IPR000007 -
Tan11g1139 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1139 K19600 - - csv:101203074 834.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1138 Tan-Chr11:8989235 Tan11g1139 Tan-Chr11:8989235 2.70E-254 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g3331 . 1 430 TUB Transcription Factor Family AT1G76900 72.3 9.8e-178 620.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan11g1138 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G76900 70.1 4.4e-170 595.1
Tan01g1235 . 1 413 TUB Transcription Factor Family AT1G76900 51.1 4.8e-116 415.6
Tan06g2627 . 13 386 TUB Transcription Factor Family AT1G76900 50.8 9.0e-115 411.4
Tan10g0947 . 13 390 TUB Transcription Factor Family AT1G76900 51.4 2.2e-113 406.8
Tan01g0725 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.4e-101 365.2
Tan11g1139 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan11g1138 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan01g3331 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 6.8e-94 341.3
Tan01g1235 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 1.4e-70 263.8
Tan10g0947 . 154 390 TUB Transcription Factor Family AT1G25280 52.4 1.2e-69 260.8
Tan06g2627 . 154 386 TUB Transcription Factor Family AT1G25280 53.9 9.8e-69 257.7
Tan01g4949 . 181 410 TUB Transcription Factor Family AT1G25280 53.4 5.4e-67 251.9
Tan03g1988 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan03g1987 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT5G18680 63.1 1.1e-100 364.0
Tan10g0947 . 98 390 TUB Transcription Factor Family AT5G18680 62.3 1.4e-95 347.1
Tan01g3331 . 112 430 TUB Transcription Factor Family AT5G18680 53.6 1.1e-84 310.8
Tan01g0725 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 3.5e-83 305.8
Tan11g1139 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan11g1138 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan01g1235 . 115 413 TUB Transcription Factor Family AT5G18680 53.0 5.2e-79 292.0
Tan01g4949 . 117 410 TUB Transcription Factor Family AT5G18680 51.2 1.6e-75 280.4
Tan03g1988 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan03g1987 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan01g0880 . 119 387 TUB Transcription Factor Family AT5G18680 50.7 1.9e-68 256.9
Tan01g1235 . 1 413 TUB Transcription Factor Family AT2G18280 61.6 4.0e-143 505.4
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan01g4949 . 3 410 TUB Transcription Factor Family AT2G18280 59.0 3.2e-124 442.6
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 2.6e-118 422.9
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 4.2e-116 415.6
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G18280 53.6 9.3e-116 414.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G18280 52.9 2.5e-113 406.4
Tan01g0880 . 54 387 TUB Transcription Factor Family AT2G18280 51.3 5.3e-95 345.5
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G47900 56.6 6.0e-134 474.9
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 3.6e-131 465.7
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan01g1235 . 5 413 TUB Transcription Factor Family AT2G47900 55.2 6.8e-122 434.9
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan01g4949 . 15 410 TUB Transcription Factor Family AT2G47900 55.4 4.3e-116 415.6
Tan01g0880 . 55 387 TUB Transcription Factor Family AT2G47900 52.9 1.2e-102 370.9
Tan06g0484 . 79 304 TUB Transcription Factor Family AT1G16070 60.0 2.7e-72 269.6
Tan01g3331 . 67 430 TUB Transcription Factor Family AT1G43640 70.2 1.1e-147 520.4
Tan01g0725 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.8e-145 513.1
Tan11g1139 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan11g1138 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan06g2627 . 47 386 TUB Transcription Factor Family AT1G43640 52.3 1.9e-107 386.7
Tan10g0947 . 49 390 TUB Transcription Factor Family AT1G43640 53.3 2.7e-106 382.9
Tan01g4949 . 36 410 TUB Transcription Factor Family AT1G47270 63.3 3.3e-134 475.7
Tan01g1235 . 34 413 TUB Transcription Factor Family AT1G47270 58.3 7.7e-123 438.0
Tan03g1988 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan03g1987 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 2.0e-115 413.3
Tan01g3331 . 31 430 TUB Transcription Factor Family AT1G47270 52.1 9.4e-113 404.4
Tan11g1139 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan11g1138 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan06g2627 . 1 386 TUB Transcription Factor Family AT1G47270 51.1 1.5e-110 397.1
Tan10g0947 . 1 390 TUB Transcription Factor Family AT1G47270 50.1 9.5e-105 377.9
Tan01g0880 . 1 387 TUB Transcription Factor Family AT1G53320 71.8 3.9e-156 548.5
Tan01g1235 . 20 413 TUB Transcription Factor Family AT1G53320 51.3 1.0e-103 374.4
Tan06g2627 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 1.5e-102 370.5
Tan10g0947 . 33 390 TUB Transcription Factor Family AT1G53320 51.9 3.4e-99 359.4
Tan10g0947 . 98 390 TUB Transcription Factor Family AT3G06380 64.8 1.4e-97 353.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT3G06380 63.1 2.0e-96 349.7
Tan01g0725 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 5.8e-83 305.1
Tan01g3331 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 3.7e-82 302.4
Tan11g1139 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan11g1138 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan01g1235 . 119 413 TUB Transcription Factor Family AT3G06380 53.8 5.1e-79 292.0
Tan01g4949 . 121 410 TUB Transcription Factor Family AT3G06380 50.7 7.3e-78 288.1
Tan03g1988 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
Tan03g1987 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28713 PF01167 Tub 8.20E-116 CL0395 Tan TF