Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1189 ATGGAGCGGGGAATTAGAGGCCTTCGGGCTGCTTGCGGGTGGCTTTTCGTCGCCTTCTGGGTGGCGGTCGATGCGTTCCCGGCCGAGGATCTGGTCGGGAGGCTGCCAGGCCAGCCAACCGTCGTCGGGTTCAGACAATTTGCAGGCTATGTCGATGTCGATGTCGATGACGGGAGAAGCTTGTTTTACTACTTTGCTGAAGCTCAGCAAGATCCCCATCTCCTGCCCCTCACTCTCTGGCTCAATGGAGGTCCAGGTTGCTCCTCCGTAGGCGGGGGTGCCTTTACAGAGTTGGGTCCCTTTTATCCTAAAGGTGATGGTCGAGGCCTTCGAAGAAACTCCATGTCCTGGAATAAAGCCTCTAATCTACTGTTTGTGGAGTCTCCTGCTGGGGTAGGATGGTCATACTCAAACAAAACCTCAGATTACACTTGTGGAGATGCTTCTACTGCCAGGGACATGCTCACATTTATGTTGAAATGGTATGACAAGTTTCCTGCTTTCAGAGATAGGTCATTTTTCCTCACAGGAGAAAGCTATGCAGGCCATTACATTCCTCAGCTAGCCGAAGCAATACTGGACTACAACATTCAATCAAAGGGCTTCAAATTCAATATGAAGGGAGTTGCTATTGGGAACCCATTACTTAATCTGGACAGGGATGCACCAGCAACCTACGAATTCTTTTGGTCTCATGGGATGATTTCAGATGAAGTTGGTGTTGCAATCATGAGAGATTGTGATTTTGATGATTATGTGTTGACGAATCCACACAATGTAAGCAAATCTTGCAACGAAGCCATAGCCGATGCCAATGGCATCGTTGGCGAGTATATTAACAACTATGATGTTCTTTTGGATGTCTGCTACCCCTCCATTGTCGAGCAAGAACTTAGATTGAAGAAACTGGCAACCAAAATAAGCATGGGAGTTGATGTGTGTATGACCTACGAAAGGCATTTTTATTTCAATTTACCGGAAGTTCAAAAGGCTCTTCATGCCAATCGTACTAATTTACCTTATCAATGGTCCATGTGCAGTGACATATTAAATTACAATTACAACGATACCAACATCAACATGCTTCCCTTACTGAAGAGAATAGTCCAAAACCACGTCCCAGTTTGGATCTTCAGTGGGGATGAAGATTCAGTGGTGCCACTACTGGGGTCTAGGACGCTGGTCCGGGAGCTGGCTCATGACCTTAAATTCAAGGTCACAGTACCCTACGGAGCTTGGTTTCACAAGGGCCAAGTCGCGGGCTGGGCCATTGAGTACGGTAATATACTCACATTTGCAACAGTTCGAGGGGCGTCCCATATGGTACCCTACGCCCAGCCCTCTAGAGCCTTACATTTGTTCTCTACCTTTGTTCGTGGGAGGAGATTGCCCAATTCTACTCGTCCTTCCATTGATGATTAA 1422 47.26 MERGIRGLRAACGWLFVAFWVAVDAFPAEDLVGRLPGQPTVVGFRQFAGYVDVDVDDGRSLFYYFAEAQQDPHLLPLTLWLNGGPGCSSVGGGAFTELGPFYPKGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNKTSDYTCGDASTARDMLTFMLKWYDKFPAFRDRSFFLTGESYAGHYIPQLAEAILDYNIQSKGFKFNMKGVAIGNPLLNLDRDAPATYEFFWSHGMISDEVGVAIMRDCDFDDYVLTNPHNVSKSCNEAIADANGIVGEYINNYDVLLDVCYPSIVEQELRLKKLATKISMGVDVCMTYERHFYFNLPEVQKALHANRTNLPYQWSMCSDILNYNYNDTNINMLPLLKRIVQNHVPVWIFSGDEDSVVPLLGSRTLVRELAHDLKFKVTVPYGAWFHKGQVAGWAIEYGNILTFATVRGASHMVPYAQPSRALHLFSTFVRGRRLPNSTRPSIDD 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9803726 9809096 + Tan0017262.1 Tan11g1189 768126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1189 473 Gene3D alpha/beta hydrolase 27 299 IPR029058 -
Tan11g1189 473 FunFam Carboxypeptidase 26 291 - -
Tan11g1189 473 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185(InterPro)
Tan11g1189 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 457 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0006508(InterPro)
Tan11g1189 473 Gene3D - 361 460 - -
Tan11g1189 473 Pfam Serine carboxypeptidase 36 460 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan11g1189 473 SUPERFAMILY alpha/beta-Hydrolases 32 463 IPR029058 -
Tan11g1189 473 FunFam Carboxypeptidase 361 460 - -
Tan11g1189 473 Gene3D - 314 350 - -
Tan11g1189 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan11g1189 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan11g1189 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan11g1189 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan11g1189 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1189 K16297 - - csv:101207193 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3371 Tan-Chr1:94138331 Tan11g1189 Tan-Chr11:9803726 3.30E-224 dispersed
Tan09g1570 Tan-Chr9:67552054 Tan11g1189 Tan-Chr11:9803726 6.50E-100 dispersed
Tan10g1613 Tan-Chr10:28612883 Tan11g1189 Tan-Chr11:9803726 2.60E-85 dispersed
Tan10g1615 Tan-Chr10:28709605 Tan11g1189 Tan-Chr11:9803726 2.90E-23 dispersed
Tan11g0915 Tan-Chr11:7454834 Tan11g1189 Tan-Chr11:9803726 1.50E-34 dispersed
Tan11g1189 Tan-Chr11:9803726 Tan06g0643 Tan-Chr6:4866595 3.10E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65