Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1195 ATGCCTCGTCGCAGGGACGACGACGACGACATTGATGCCGATGAGGAAGAGTATGAGGATGAGATGGAACAGCCTCTGGACGATGAGGAGGAAGAGGAAGATCGCTCGAGTAGGAAGCGGCGGAGATCGGATTTTATAGACGACGTTGCGGAAGAGGATGAGGATGAGGAGGAGGAAGAAGAGGACGACGACGATGATTTTGGTGGCGGTGCTAGGAGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTGGATATTGAGGCGGAGGTTGATAGCGATGACGATGAAGAGGAGGACGACGCAGAGGACGACTTCATAGTTGATGCTACAACTGATATACCTGATGAAGATGAAAATAGAAGGATGCATCGCCGCCCATTGTTACCACGAGAAGACGAACAGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCTAGATATGCAAGATCAAATCATATGGAATATGACGAGGAGACAACAGAAGTGGAGCAGCAAGCTCTTTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAAATGCACGATTGGCCGTGAGCGAGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAATTGCTCTTGATCATTTGAAGAACTTTATATATATTGAAGCGGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATTCACAAAAAATAATGCTTGTTCCAATTAAGGAAATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCCAGAGATACATGGGTCAGAATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTAGATGTTGATAATGTGCGACAGAGGGTTACTGTGAAACTTATTCCACGAATAGACTTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCACGTTTTATGAATATTGATGAAGCTAGAGAGTTGCATATCCGTGTAGAGCGCAGGCGTGATCCCATTACCGGAGAATACTTTGAGAATATAGGTGGCATGTTTTTCAAAGATGGTTTCTTGTATAAAACAGTGTCCGTGAAGTCAATAAGTGCCCAAAACATAAAGCCGACTTTTGATGAACTTGAGAAATTTCGAAAGCCTGGGGAGAATGGTGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCGAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTCAAGGGAGATCTGAAGAATTTGAAAGGATGGGTGGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCGAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGAAATCATGTAAAAGTTGTATCGGGGACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGAGCAACATGTGCTTATTATACTATCCGATACGACCAAGGAACATATCCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACGGGTGTGACGAGAATTGGGGATTATGAACTTCACGATCTTGTTTTATTGGATAATATGAGCTTTGGCGTAATTATACGTGTAGAAAGTGAGGCTTTTCAGGTTCTTAAGGGTATTCCAGATCGACCTGAGGTTGATATTGTGAAGTTGAGAGAAATAAAAAGTAAGATCGACAAGAAAATCAATGTTCAAGATCGGTTCAATAACACAATTTCCGCCAAAGACATTGTGAGGATTCTTGAAGGTCCCTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGAGTGCTGTTCATTTATGATCGCCATCACTTGGAACATGCAGGCTTTATTTGTGCTAAATCACAGTCTTGTGTTGTTGTTGGTGGATCCCGAACCAATGGAAATAGAAACGGTAACTCTAGGCTTGCTGGCCTTGGGACTCCACCTCGTTTTCCTCAGTCACCTAAGAGATTTCCCAGAGGAGGTCCCCCCAATGATTCTGGCGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGTTTGGTTGGATCGACAGTGAAAGTTCGGCAGGGTCCTTACAAGGGTTATCGTGGGCGTGTTGTTGAAATTAAAGGCCAACTGGTTCGAGTAGAGCTTGAGTCTCAAATGAAAGTTGTCACAGTTGACCGCAATTTTATCTCAGATAATGTGGCTGTTTCAACCCCCTATCGGGATGCATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCCATGCATCCATACATGACCCCAATGAGAGATATGGGAACAACGCCAATTCATGATGGCATGAGGACACCTATGCGAGATCGAGCATGGAATCCATATGCACCCATGAGTCCGTCAAGGGATAACTGGGAGGAAGGGAACCCTGCAACTTGGGGAACGAGTCCACAGTACCAGGAAGCCCTCCTTCACGAACTTACGAAGCCCCAACTCCTGGTTCTGGTTGGGCCAACACTCCTGGTGGCAGTTACAGTGATGCTGGTACCCCCCGGGATAGTGGTTCAGCCTATGCTAATGCTCCGAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGA 2664 45.42 MPRRRDDDDDIDADEEEYEDEMEQPLDDEEEEEDRSSRKRRRSDFIDDVAEEDEDEEEEEEDDDDDFGGGARRRRAKRPSGSQFLDIEAEVDSDDDEEEDDAEDDFIVDATTDIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCTIGREREAAVCLMQKCIDRGPEMQIRSAIALDHLKNFIYIEADKEAHVREACKGLRNIYSQKIMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSVKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKINVQDRFNNTISAKDIVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNRNGNSRLAGLGTPPRFPQSPKRFPRGGPPNDSGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAVSTPYRDASRYGMGSETPMHPSRTPMHPYMTPMRDMGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEEGNPATWGTSPQYQEALLHELTKPQLLVLVGPTLLVAVTVMLVPPGIVVQPMLMLRAHTCLQLLVDSP 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9849130 9869780 - Tan0011270.2 Tan11g1195 768132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1195 887 SMART nusgn_4 175 261 IPR006645 GO:0006354(InterPro)|GO:0140673(InterPro)
Tan11g1195 887 SUPERFAMILY Translation proteins SH3-like domain 462 521 IPR008991 -
Tan11g1195 887 FunFam Transcription elongation factor SPT5 157 259 - -
Tan11g1195 887 SMART kow_9 699 726 IPR005824 -
Tan11g1195 887 SMART kow_9 266 293 IPR005824 -
Tan11g1195 887 SMART kow_9 418 445 IPR005824 -
Tan11g1195 887 SMART kow_9 470 497 IPR005824 -
Tan11g1195 887 SMART kow_9 594 621 IPR005824 -
Tan11g1195 887 MobiDBLite consensus disorder prediction 32 47 - -
Tan11g1195 887 PANTHER SUPPRESSOR OF TY 5 68 827 IPR039659 GO:0003729(PANTHER)|GO:0006357(InterPro)|GO:0006368(PANTHER)|GO:0032044(PANTHER)|GO:0032784(InterPro)
Tan11g1195 887 FunFam Transcription elongation factor SPT5 266 308 - -
Tan11g1195 887 FunFam Transcription elongation factor SPT5 473 522 - -
Tan11g1195 887 PIRSF Spt5 3 845 IPR017071 GO:0006357(InterPro)|GO:0032784(InterPro)
Tan11g1195 887 Pfam KOW motif 702 733 IPR005824 -
Tan11g1195 887 FunFam Transcription elongation factor SPT5 413 470 - -
Tan11g1195 887 CDD KOW_Spt5_3 470 520 IPR041976 -
Tan11g1195 887 CDD NGN_Euk 177 259 IPR039385 -
Tan11g1195 887 CDD KOW_Spt5_4 598 640 IPR041977 -
Tan11g1195 887 Coils Coil 131 151 - -
Tan11g1195 887 Gene3D - 157 259 IPR036735 GO:0006354(InterPro)
Tan11g1195 887 MobiDBLite consensus disorder prediction 651 705 - -
Tan11g1195 887 Pfam Early transcription elongation factor of RNA pol II, NGN section 177 258 IPR005100 -
Tan11g1195 887 ProSitePatterns Ribosomal protein L24 signature. 422 439 IPR005825 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Tan11g1195 887 Pfam Spt5 transcription elongation factor, acidic N-terminal 84 171 IPR022581 -
Tan11g1195 887 CDD KOW_Spt5_1 270 307 IPR041973 -
Tan11g1195 887 CDD KOW_Spt5_5 699 747 IPR041978 -
Tan11g1195 887 Gene3D - 266 308 IPR014722 -
Tan11g1195 887 MobiDBLite consensus disorder prediction 48 66 - -
Tan11g1195 887 MobiDBLite consensus disorder prediction 1 106 - -
Tan11g1195 887 FunFam Transcription elongation factor SPT5 685 749 - -
Tan11g1195 887 MobiDBLite consensus disorder prediction 88 106 - -
Tan11g1195 887 Gene3D - 473 522 IPR014722 -
Tan11g1195 887 Gene3D - 685 749 IPR014722 -
Tan11g1195 887 Gene3D - 413 470 IPR014722 -
Tan11g1195 887 MobiDBLite consensus disorder prediction 9 31 - -
Tan11g1195 887 CDD KOW_Spt5_2 419 469 IPR041975 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1195 K15172 - - csv:101204562 1441.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1195 Tan-Chr11:9849130 Tan11g1547 Tan-Chr11:14317297 0.00E+00 dispersed
Tan11g1194 Tan-Chr11:9849130 Tan11g1195 Tan-Chr11:9849130 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39