Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1203 ATGGCGCTCGATAACTGTATACAACTGAGCACAGCCGCCGCCATGTGCGCCGCCACTTCCATACCCAAATCTCACCCATTCTCTTCTAATTTCCACCAAAAGACAACCGTTTCACTTCAACGCCTCAACAAATTACCCTCTTCCATTTCGCGATTCAAACCCTTCTTTCCTTCCACCTCCGTCTCGACTTTCAGCAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGAGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGCTGGAACGAGTTGGTGGTGGAGAGTCAAAAGACTGTGCTGGTTGAGTTTTGGGCGCCGTGGTGTGGGCCGTGTAAGATGATTGAGCCTGTGATTAAGGAATTGGCTCAGGATTATGCAGGGAAAATCGTGTGTTTGAAGCTCAATACGGATCTTAACCCAAATGTGGCCTCCAAATATGGGATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGAGCGTTATTGGGGCTGTTCCCAAATCCACCTTGTCCGCCACCATTGATAAGTATCTCGAGGTTTGA 561 49.2 MALDNCIQLSTAAAMCAATSIPKSHPFSSNFHQKTTVSLQRLNKLPSSISRFKPFFPSTSVSTFSKSRSVTCKARGAVDDVKEVTESSWNELVVESQKTVLVEFWAPWCGPCKMIEPVIKELAQDYAGKIVCLKLNTDLNPNVASKYGIRSIPTVLFFKNGQKRESVIGAVPKSTLSATIDKYLEV 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9963568 9964615 - Tan0021086.1 Tan11g1203 768140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1203 186 FunFam Thioredoxin 76 184 - -
Tan11g1203 186 Pfam Thioredoxin 81 182 IPR013766 -
Tan11g1203 186 ProSiteProfiles Thioredoxin domain profile. 55 185 IPR013766 -
Tan11g1203 186 Gene3D Glutaredoxin 80 185 - -
Tan11g1203 186 PANTHER GEO12009P1 65 184 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Tan11g1203 186 PRINTS Thioredoxin family signature 100 108 - -
Tan11g1203 186 PRINTS Thioredoxin family signature 108 117 - -
Tan11g1203 186 PRINTS Thioredoxin family signature 148 159 - -
Tan11g1203 186 SUPERFAMILY Thioredoxin-like 72 185 IPR036249 -
Tan11g1203 186 ProSitePatterns Thioredoxin family active site. 101 119 IPR017937 -
Tan11g1203 186 NCBIfam thioredoxin 85 183 IPR005746 GO:0015035(InterPro)
Tan11g1203 186 CDD TRX_family 87 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1203 K03671 - - csv:101218257 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1564 Tan-Chr1:15892340 Tan11g1203 Tan-Chr11:9963568 2.00E-38 dispersed
Tan02g0919 Tan-Chr2:10843914 Tan11g1203 Tan-Chr11:9963568 5.20E-28 dispersed
Tan09g0661 Tan-Chr9:54507094 Tan11g1203 Tan-Chr11:9963568 2.90E-08 dispersed
Tan10g1782 Tan-Chr10:53852807 Tan11g1203 Tan-Chr11:9963568 9.00E-15 dispersed
Tan11g1203 Tan-Chr11:9963568 Tan10g1781 Tan-Chr10:53852807 8.70E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35