Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1214 ATGTATGTATATATGTATGGAAGTCAACACTCTTACCATGTTATGCGTTCCTTTTTGATTTCTTTCCTAACTCTATTGGTCCAGGCATTGGAGGCTCTAAGCAAAAATTGTGGTGATACCGTTTTTAAGCTGATTGTGGAACGTAATATCCTGCACGAAATGCTTAAAATTGTAAAGAAGAAGCCTGATTTAAATGTACGGGACAAAATATTAGCTCTGGTAGATGCATGGCAAGCGGCATTTGGTGGTGACTCCAAGGGAAAGTATCCACAATACTATGCAGCTTACCATGAATTGATGAATGCCGGATTTCAATTTCCACCAAGAGAAGAGAATGTTGAGCAGTTCTTTAGTTCACCTCAGATACAGCCTGTTATTGAGCCCCCTGTTTCAGCTTATGATGATCTTGCTGTTCAGGCTTCTCTCCAGTCTGATGCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGGGCAGGGACTAGCAGATGTTTTATTGGAAATGCTCGGTGCATTGGATCCTAAGACTCCGGAGGCTCTGAAGGAAGAAGTGATTGTTGATCTCGTTGATCAATGTCGTTCCTACCACCGCCGTGTCATGATACTTGTAAATGAGAACACAGATGAGGAACTGTTATGTCAAGGATTGGTGTTGAATGACAATCTGCAGCGTGTACTCAGCTACCACGATGACATTGCGAAAGGAAAATTCATGATGGAAACTAGAAGAACTGAACCTTCCGTTCCATCGGTTCCGTATATGAATCCTGAGGATGATGGTTCAGAAGATGATTTTACACCGTTAGCTCGCAGGTCAACGAGAGATCACATTTTTGAAAAGGACAGGAAATTGGCAAATGGTCAATCATCTCGAGTTAGTCCACTTTCTTCACCCTCATCAAAGAAGACGACGAGTGCAGAAATGATCGATCATCTCAGCAGCGATGCGTACAAACCTCAAGGGCCTCCAAGGACAGCAGAGCCGTCATCTTATCCACCTCCAGTTTTCCCACCTTCACCAAAAACTTCATCTCCCTCACCTTTCTACACTAGACAACCTCTGTTCGACGAACCACCTCCAAGAGCCATATCCACAAATCTGCTTCCGGCAACACCTCGGGACGCTCAATCTCCAGGCTCCCTCCCTCCCCCACCCTCAAGATATAATCAAAGACAACAATATTTTGAGCAACAAAAAGCTGTTACAGGAGGAGGCAATCAGCCCCATTTGAGCAACGGCCATGGTTCTTCTTATGACAACGTATTGGAACATACAAAGAACCTGTCGCTCAATCCTTCCACCCCAACCAGATCTGCAGAGCATGAAGAAGCCCTTTTCAAAGATCTGGTGAATTTTGCCAAGATCAAGTCATCTTCATCCTCGAAATCCAATCGACCATTCTGA 1401 44.04 MYVYMYGSQHSYHVMRSFLISFLTLLVQALEALSKNCGDTVFKLIVERNILHEMLKIVKKKPDLNVRDKILALVDAWQAAFGGDSKGKYPQYYAAYHELMNAGFQFPPREENVEQFFSSPQIQPVIEPPVSAYDDLAVQASLQSDASGLSLPEIQNGQGLADVLLEMLGALDPKTPEALKEEVIVDLVDQCRSYHRRVMILVNENTDEELLCQGLVLNDNLQRVLSYHDDIAKGKFMMETRRTEPSVPSVPYMNPEDDGSEDDFTPLARRSTRDHIFEKDRKLANGQSSRVSPLSSPSSKKTTSAEMIDHLSSDAYKPQGPPRTAEPSSYPPPVFPPSPKTSSPSPFYTRQPLFDEPPPRAISTNLLPATPRDAQSPGSLPPPPSRYNQRQQYFEQQKAVTGGGNQPHLSNGHGSSYDNVLEHTKNLSLNPSTPTRSAEHEEALFKDLVNFAKIKSSSSSKSNRPF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10074709 10079263 + Tan0012575.2 Tan11g1214 768151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1214 466 Pfam VHS domain 28 100 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Tan11g1214 466 PANTHER TOM1-LIKE PROTEIN 27 463 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Tan11g1214 466 MobiDBLite consensus disorder prediction 324 343 - -
Tan11g1214 466 ProSiteProfiles VHS domain profile. 27 107 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Tan11g1214 466 CDD VHS 16 99 - -
Tan11g1214 466 Gene3D - 11 118 IPR008942 -
Tan11g1214 466 CDD GAT_GGA-like_plant 153 231 - -
Tan11g1214 466 SUPERFAMILY ENTH/VHS domain 28 108 IPR008942 -
Tan11g1214 466 Pfam GAT domain 161 234 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Tan11g1214 466 MobiDBLite consensus disorder prediction 286 309 - -
Tan11g1214 466 MobiDBLite consensus disorder prediction 385 437 - -
Tan11g1214 466 SUPERFAMILY GAT-like domain 139 235 - -
Tan11g1214 466 MobiDBLite consensus disorder prediction 262 285 - -
Tan11g1214 466 MobiDBLite consensus disorder prediction 239 440 - -
Tan11g1214 466 Gene3D - 143 240 IPR038425 -
Tan11g1214 466 ProSiteProfiles GAT domain profile. 145 233 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1214 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3292 Tan-Chr1:88437295 Tan11g1214 Tan-Chr11:10074709 1.70E-122 dispersed
Tan11g1213 Tan-Chr11:10074709 Tan11g1214 Tan-Chr11:10074709 2.20E-247 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76